Difference between revisions of "DatLab and SUIT protocols"
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|description= | |description=This is a brief summary of steps to be taken for performing a high-resolution respirometry experiment with '''[[SUIT protocols]]''' using the OROBOROS [[Oxygraph-2k]] and '''[[DatLab]]''' software. (1) Search for a specific [[SUIT protocol name]] (go to [[MitoPedia:_SUIT#SUIT_protocols |MitoPedia: SUIT]]) and follow the link to the corresponding publication or MiPNet communication. The [[marks]] define the section of a [[respiratory state]] in the SUIT protocol. | ||
The mark name contains the sequential number and the [[metabolic control variable]], ''X''. The metabolic control variable is the name of the preceding SUIT [[event]]. The [[MitoPedia: SUIT protocols |list of MitoPedia SUIT protocols]] can thus be sorted by the SUIT protocol category (sorting by SUIT protocol name), and by [[Subcategories of SUIT protocols |SUIT protocol subcategory]] which is listed as the abbreviation of the SUIT protocol name. The [[SUIT protocol pattern]] is best illustrated by a [[coupling-pathway control diagram]] (see Figure). | |||
|info=[[MitoPedia: DatLab]] | |info=[[MitoPedia: DatLab]] | ||
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Revision as of 16:28, 19 July 2016
- high-resolution terminology - matching measurements at high-resolution
DatLab and SUIT protocols
Description
This is a brief summary of steps to be taken for performing a high-resolution respirometry experiment with SUIT protocols using the OROBOROS Oxygraph-2k and DatLab software. (1) Search for a specific SUIT protocol name (go to MitoPedia: SUIT) and follow the link to the corresponding publication or MiPNet communication. The marks define the section of a respiratory state in the SUIT protocol.
The mark name contains the sequential number and the metabolic control variable, X. The metabolic control variable is the name of the preceding SUIT event. The list of MitoPedia SUIT protocols can thus be sorted by the SUIT protocol category (sorting by SUIT protocol name), and by SUIT protocol subcategory which is listed as the abbreviation of the SUIT protocol name. The SUIT protocol pattern is best illustrated by a coupling-pathway control diagram (see Figure).
Reference: MitoPedia: DatLab
MitoPedia concepts:
MiP concept,
SUIT concept
Contributed by Gnaiger Erich 2016-07-19.
