Difference between revisions of "MitoEAGLE data: muscle"
From Bioblast
| Line 12: | Line 12: | ||
:::: The aim of WG2 will be to provide access to complete data sets for post-study statistical analysis and use harmonization tools (WG1) for standardized documentation, to initiate a data repository on muscle tissue from humans and model organisms in health and disease. Data sets shall be obtained from already published and new studies, prompting participating labs to report experimental details beyond those already published as far as possible (using tools such as PubMed Commons). As a result, specific protocols will be summarized for handling muscle tissue. Depending on specific interests, WG2 may decide to extend their focus to other tissue types. | :::: The aim of WG2 will be to provide access to complete data sets for post-study statistical analysis and use harmonization tools (WG1) for standardized documentation, to initiate a data repository on muscle tissue from humans and model organisms in health and disease. Data sets shall be obtained from already published and new studies, prompting participating labs to report experimental details beyond those already published as far as possible (using tools such as PubMed Commons). As a result, specific protocols will be summarized for handling muscle tissue. Depending on specific interests, WG2 may decide to extend their focus to other tissue types. | ||
== WG2 Participants == | |||
{{#ask:[[MitoPedia topic::EAGLE]] [[In country::+]] [[Has COST WG2::+]] | |||
| mainlabel=- | |||
|?In country=Country | |||
|?In city=City | |||
|?=Contact | |||
|sort=In country | |||
|order=ascending | |||
|limit=5000 | |||
|format=broadtable | |||
|offset=0 | |||
}} | |||
== | |||
== WG2 Management == | |||
=== Tasks === | === Tasks === | ||
Revision as of 14:52, 27 April 2016
 |
News and Events |  |
 |
Working Groups | Short-Term Scientific Missions | Management Committee | Members |  |
COST Action CA15203 (2016-2021): MitoEAGLE
Evolution-Age-Gender-Lifestyle-Environment: mitochondrial fitness mapping
MitoEAGLE data: muscle
WG2
- MITOEAGLE data repository in muscle and other tissues
WG2 Description
- During the past 10 years, a dramatically increasing number of studies report respirometric data on human muscle tissue (e.g. Christiansen 2015 Am J Physiol). Muscle mitochondrial function is particularly studied in genetically engineered mouse models of human diseases (e.g. Jelenik 2014 Diabetes). However, despite the many published data, lack of consistency often precludes quantitative comparison among data sets with permeabilized or homogenized muscle fibres or isolated mitochondria, normalized to either tissue wet weight, dry weight, protein content, citrate synthase activity or other mitochondrial markers. In the absence of validated conversion factors, these data remain largely unconnected and can only be qualitatively linked.
- The aim of WG2 will be to provide access to complete data sets for post-study statistical analysis and use harmonization tools (WG1) for standardized documentation, to initiate a data repository on muscle tissue from humans and model organisms in health and disease. Data sets shall be obtained from already published and new studies, prompting participating labs to report experimental details beyond those already published as far as possible (using tools such as PubMed Commons). As a result, specific protocols will be summarized for handling muscle tissue. Depending on specific interests, WG2 may decide to extend their focus to other tissue types.
WG2 Participants
| Country | City | Contact |
|---|---|---|
| Australia | Melbourne | Bishop David J |
| Austria | Innsbruck | Gnaiger Erich |
| Austria | Salzburg | Mayr JA |
| Austria | Innsbruck | Doerrier Carolina |
| Austria | Innsbruck | Laner Verena |
| Belgium | Liege | Votion Dominique-Marie |
| Belgium | Leuven | Bird Matthew |
| Brazil | São Paulo | Ferreira Julio Cesar B |
| Brazil | Jaboticabal, SP | Garcia Geovana S |
| Canada | Vancouver | Boushel Robert C |
| Canada | Edmonton (Alberta) | Lemieux Helene |
| Canada | Rimouski | Blier Pierre U |
| Canada | Antigonish | Kane Daniel A |
| Canada | Rimouski | Vandermeeren E |
| Croatia | Split | Mihanovic I |
| Croatia | Zagreb | Saric A |
| Czech Republic | Pilsen | Markova Michaela |
| Czech Republic | Prague 10 | Krajcova Adela |
| Czech Republic | Prague | Elkalaf Moustafa |
| Czech Republic | Pilsen | Kuncova J |
| Czech Republic | Hradec Králové | Waldauf P |
| Denmark | Malov | Hey-Mogensen M |
| Denmark | Copenhagen | Dela Flemming |
| Denmark | Copenhagen | Larsen Steen |
| Denmark | Copenhagen N | Mortensen OH |
| Denmark | Hvidovre | Nehlin Jan O |
| Denmark | Copenhagen | Gonzalez-Franquesa Alba |
| Estonia | Tallinn | Truu Laura |
| Estonia | Tallinn | Kaambre Tuuli |
| Estonia | Tallinn | Vendelin Marko |
| Estonia | Tallinn | Tepp Kersti |
| Estonia | Tallinn | Aid-Vanakova Jekaterina |
| Estonia | Tallinn | Karro N |
| Estonia | Tartu | Paju Kalju |
| Estonia | Tallinn | Puurand Marju |
| Finland | Jyvaeskylae | Lehti Maarit |
| Finland | Helsinki | Pirinen E |
| France | Paris | Petit Patrice X |
| France | Bordeaux cedex | Mourier A |
| France | Grenoble Cedex 9 | Schlattner Uwe |
| France | Montpellier Cedex 1 | Chabi Beatrice |
| France | Paris | Ventura-Clapier R |
| France | Grenoble cedex 9 | Dubouchaud Herve |
| France | Montpellier | Cortade F |
| France | Paris | Armand Anne-Sophie |
| Germany | Bremerhaven | Mark Felix Christopher |
| Germany | Leipzig | Ost Mario |
| Germany | Rostock | Haider F |
| Germany | Cologne | Pesta Dominik |
| Germany | Nuthetal | Klaus S |
| Germany | Munich | Jastroch M |
| Germany | Bochum | Platen P |
| Germany | Düsseldorf | Granata Cesare |
| Germany | Duesseldorf | Jelenik T |
| Germany | Köln | Kimoloi Sammy |
| Germany | Duesseldorf | Roden Michael |
| Greece | Heraklio | Sidiropoulou K |
| Greece | Athens | Trougakos Ioannis P |
| Greece | Heraklion | Tavernarakis Nektarios |
| India | Haryana | Sharma Vipin |
| Ireland | Dublin | O'Gorman Donal |
| Ireland | Dublin | Porter Richard K |
| Ireland | Sligo | Murphy J |
| Israel | Zrifin | Sova Marina |
| Israel | Jerusalem | Saada Reisch Ann |
| Israel | Rishon Le Zion | Hachmo Yafit |
| Italia | Udine | Salvadego Desy |
| Italy | Milan | Giovarelli Matteo |
| Italy | Bologna | Genova Maria Luisa |
| Italy | Pisa | Gastaldelli Amalia |
| Italy | Rome | Scatena Roberto |
| Italy | Novara | Reano Simone |
| Italy | Milan | De Palma Clara |
| Japan | Sapporo | Shirakawa R |
| Japan | Sapporo | Nambu H |
| Japan | Sapporo | Maekawa S |
| Latvia | Riga | Kuka Janis |
| Latvia | Riga | Zvejniece Liga |
| Latvia | Riga | Inashkina I |
| Latvia | Riga | Liepins Edgars |
| Luxembourg | Strassen | Devaux Yvan |
| Malta | Msida | Vella Joanna |
| Netherlands | Maastricht | Grevendonk L |
| Netherlands | Maastricht | Hoeks Joris |
| Netherlands | BT Amsterdam | Jaspers Richard T |
| Netherlands | Maastricht | Van Polanen N |
| Netherlands | Wageningen | Keijer Jaap |
| Netherlands | Amsterdam | De Goede Paul |
| Niederlande | ER Masstricht | De Theije C |
| Niederlande | ER Masstricht | De Wit-Verheggen V |
| Norway | Tromsoe | Jansen Kirsten M |
| Norway | Oslo | Rustan AC |
| Norway | Bergen | Tronstad Karl Johan |
| Norway | Oslo | Eide L |
| Norway | Tromsoe | Larsen Terje S |
| Norway | Tromsoe | Schots Pauke C |
| Norway | Ullevål | Heiestad Christina |
| Norway | Tromsoe | Aasum E |
| Norway | Oslo | Lund Jenny |
| Norway | Oslo | Nikolic N |
| Norway | Oslo | Torp May-Kristin |
| Poland | Lodz | Labieniec-Watala Magdalena |
| Poland | Warsaw | Sek Aleksandra |
| Poland | Warsaw | Kampa Rafal Pawel |
| Poland | Warsaw | Dymkowska Dorota |
| Poland | Lodz | Watala Cezary |
| Portugal | Porto | Beleza Jorge |
| Portugal | Cantanhede | Martins Joao D |
| Portugal | Coimbra | Palmeira Carlos |
| Portugal | Coimbra | Martins Marques T |
| Portugal | Cantanhede | Ferreira LL |
| Portugal | Porto | Coxito Pedro |
| Portugal | Coimbra | Carvalho Eugenia |
| Portugal | Porto | Magalhaes Jose |
| Portugal | Coimbra | Pereira Susana P |
| Romania | Timisoara | Lighezan R |
| Romania | Timisoara | Muntean Danina M |
| Singapore | Singapore | Hausenloy Derek J |
| Slovakia | Bratislava | Sumbalova Zuzana |
| Slovakia | Bratislava | Ukropcova B |
| Slovakia | Bratislava | Maderova D |
| Slovakia | Bratislava | Nemec Michal |
| Slovakia | Bratislava | Ukropec J |
| Slovenia | Ljubljana | Pirkmajer Sergej |
| Slovenia | Ljubljana | Dolinar K |
| Slovenia | Ljubljana | Mars T |
| South Africa | Smith James | |
| Spain | Barcelona | Guitart M |
| Spain | Armilla, Granada | Escames Germaine |
| Spain | Barcelona | Garcia-Roves Pablo Miguel |
| Spain | Granada | Lopez Garcia Luis Carlos |
| Spain | Madrid | Moran M |
| Spain | Madrid | Cadenas S |
| Spain | Barcelona | Sebastian D |
| Spain | Barcelona | Catalan M |
| Spain | Barcelona | De la Torre Lara J |
| Spain | Sevilla | Bustos Matilde |
| Spain | Barcelona | Zorzano Antonio |
| Spain | Barcelona | Batlle M |
| Spain | Armilla (Granada) | Fernandez-Ortiz Marisol |
| Spain | Armilla (Granada) | Acuna-Castroviejo Dario |
| Spain | Barcelona | Gama Perez Pau |
| Spain | A Coruña | Blanco FJ |
| Sweden | Linköping | Fontes-Oliveira CC |
| Sweden | Stockholm | Cardinale Daniele A |
| Switzerland | Lausanne | Weger M |
| Switzerland | Bern | Nuoffer Jean-Marc |
| Switzerland | Lausanne | Zalachoras I |
| Switzerland | Lausanne | Gebara E |
| Switzerland | Lausanne | Morato Fornaguera L |
| Switzerland | Lausanne | Sandi Carmen |
| The Netherlands | Wageningen | Van der Ende Miranda |
| The Netherlands | BT Amsterdam | Wuest Rob CI |
| Turkey | Ankara | Tuncay Erkan |
| USA | Little Rock | Porter Craig |
| USA | Baton Rouge | Axelrod Christopher L |
| USA | Orlando | Coen Paul M |
| USA | Gainesville | Wohlgemuth Stephanie E |
| USA | Torrance | Rossiter Harry B |
| USA | Chicago | Dayanidhi Sudarshan |
| USA | Fairbanks | O'Brien Kristin |
| USA | Baton Rouge | Irving Brian A |
| USA | Fort Collins | Chicco Adam J |
| USA | Baltimore | Gonzalez-Freire Marta |
| USA | College Station | White-Springer Sarah H |
| USA | Baltimore | Fang Evandro F |
| USA | Colorado Springs | Jacobs RA |
| USA | Ann Arbor | Beard Daniel A |
| USA | Norfolk | Lai Nicola |
| USA | Gainesville | Hepple Russell T |
| USA | Orlando | Distefano Giovanna |
| USA | St Louis | Welch R |
| USA | Boca Raton | Khamoui Andy V |
| USA | Gainesville | Neyroud D |
| USA | College Station | Latham C |
| United Kingdom | Manchester | Giakoumaki I |
| United Kingdom | London | Szabadkai Gyorgy |
| United Kingdom | Birmingham | Garten Antje |
| United Kingdom | Loughborough | Ebanks Brad |
| United Kingdom | Birmingham | Thakker A |
| United Kingdom | Plymouth, Devon | McKenna Helen T |
| United Kingdom | Nottingham | Chakrabarti Lisa |
| United Kingdom | Cambridge | Shiroma Jonathan G |
| United Kingdom | Birmingham | Ashcroft S |
| United Kingdom | Brighton | Moore Anthony L |
| United Kingdom | Leeds | Boyle JP |
| United Kingdom | Oxford | Makrecka-Kuka Marina |
| United Kingdom | Cambridge | Murray Andrew James |
| United Kingdom | Birmingham | Joanisse S |
| United States | Providence | Siamwala J |
WG2 Management
Tasks
- Call for participating labs to deliver relevant experimental data on already published studies and to report them in a standardized format.
- Collection and indexing of the data sets as required for statistical analysis.
- Discussion of procedures, protocols and general guidelines.
- Draft a comprehensive review on mt-function in muscle tissue (registration at PROSPERO, link with EQUATOR).
- Opening of the database to the research public for data search and moderated entry of new data sets.
Milestones
- Call for data report delivered.
- Data sets entered in standardized format.
- Summary, interpretation and discussion of data for review.
Deliverables
- A MITOEAGLE database on muscle tissue from humans and model organisms.
- A set of guidelines for future studies on mitochondrial bioenergetics in muscle tissue.
- Draft of review manuscript.
Projects in progress
- » MiPMap
