Talk:MitoEAGLE protocols, terminology, documentation

From Bioblast

Participants

CountryCityContact
ArmeniaYerevanTrchounian K
AustraliaMelbourneKuang Jujiao
AustraliaMelbourneWhitfield Jamie
AustraliaParkvilleHardee Justin P
AustraliaMelbourneFerri Alessandra
AustraliaMelbourneStepto Nigel K
AustraliaSydneyHoehn Kyle L
AustraliaQueenslandHolland Olivia J
AustraliaSyndeyTon Riccardo
AustraliaQueenslandFisher Joshua J
AustraliaMelbourneCassar Samantha
AustraliaMelbourneHewakapuge Sudinna
AustraliaNedlandsPerks Kara L
AustraliaQueenslandRadenkovic Filip
AustraliaClaytonWolff Jonci Nikolai
AustraliaVictoriaWinwood-Smith Hugh
AustraliaBurwoodTrewin Adam J
AustraliaMelbourneGenders Amanda J
AustraliaMelbourneLionett S
AustraliaMelbourneCoughlan Melinda T
AustraliaSydneyKrycer James R
AustraliaNewtown, SydneyStocker Roland
AustraliaClayton VictoriaAlton Lesley
AustraliaQueenslandDong Lan-Feng
AustraliaNedlandsFilipovska Aleksandra
AustraliaMelbourneSaner Nicholas
AustraliaSouthportVidimce Josif
AustraliaMelbourne, VICMuccini Anna Maria
AustraliaMelobourneBotella Javier
AustraliaGeelong, VictoriaMcKenzie Matthew
AustraliaVictoriaVan Bergen Nicole J
AustriaInnsbruckPlangger Mario
AustriaInnsbruckAntunes Diana
AustriaKapferer Werner
AustriaKlosterneuburgSazanov Leonid A
AustriaInnsbruckCecatto Cristiane
AustriaInnsbruckKarabatsiakis Alexander
AustriaInnsbruckSchmitt Sabine
AustriaInnsbruckGoebel G
AustriaInnsbruckKlocker Helmut
AustriaInnsbruckSchwarzer Christoph
AustriaInnsbruckBurtscher Martin
AustriaAldransHaider Markus
AustriaInnsbruckGallee Leon
AustriaInnsbruckSchartner Melanie
AustriaInnsbruckThapa Maheshwor
AustriaInnsbruckDi Marcello Marco
AustriaInnsbruckPerez Valencia Juan Alberto
AustriaSalzburgKofler B
AustriaInnsbruckGnaiger Erich
AustriaInnsbruckBergmeister Lisa
AustriaInnsbruckKeller Markus A
AustriaInnsbruckSobotka Ondrej
AustriaInnsbruckGarcia-Souza Luiz F
AustriaInnsbruckCardoso Luiza HD
AustriaViennaKozlov Andrey V
AustriaInnsbruckNindl Veronika
AustriaInnsbruckDoerrier Carolina
AustriaInnsbruckLaner Verena
AustriaInnsbruckPassrugger Manuela
AustriaInnsbruckMeszaros Andras T
AustriaInnsbruckHoppel Florian
BelgiumNamurArnould Thierry
BelgiumLiegeVotion Dominique-Marie
BelgiumLeuven, FlandersBaekelandt V
BelgiumBrusselsSonveaux P
BelguimSart Tilman (Liège)Kruse C
BrasilPorto AlegreHaas Clarissa
BrasiliaLimeiraRopelle Eduardo R
BrazilSanta Maria - RSGoncalves Debora Farina
BrazilSao PauloSilber Ariel Mariano
BrazilJaboticabalOliveira Marcos Tulio
BrazilRio de JaneiroOliveira Marcus F
BrazilSao PauloVercesi Anibal E
BrazilRio de JaneiroGalina Antonio
BrazilSão PauloKowaltowski Alicia J
BrazilSanta Maria - Rio Grande do SulSoares Felix Alexandre Antunes
BrazilSão PauloCrispim Marcell
BrazilRio de JaneiroVieyra Adalberto
CanadaMontreal, QuebecBergdahl Andreas
CanadaVancouverBovard Josh
CanadaEdmontonHan Woo Hyun
CanadaAntigonishWeir M
CanadaVancouver, BCTausan Daniel
CanadaQuebecJoseph Vincent
CanadaEdmonton (Alberta)Lemieux Helene
CanadaHamiltonScott Graham R
CanadaGuelphHolloway Graham P
CanadaSaint JohnPulinilkunnil Thomas
CanadaWinnipegChowdhury Subir Roy
CanadaOttawaHarper Mary-Ellen
CanadaMontréalBreton Sophie
CanadaCharlottetownAdiele Reginald C
CanadaRimouskiBlier Pierre U
CanadaRimouskiMunro Daniel
CanadaMoncton, NBPichaud Nicolas
CanadaOttawaDarveau Charles-A
CanadaEdmontonLucchinetti Eliana
CanadaEdmontonZaugg Michael
CanadaHamiltonTarnopolsky Mark A
ChileCoyhaiqueJana Prado Fabian
ChinaPukou, Nanjing,Gan Zhenji
ChinaFuzhou, Fujian ProvinceChen Qi
ChinaXi`anLiu Jiankang
ChinaTianjinZhang Yong
CroatiaSplitLjubkovic M
CroatiaZagrebRubelj Ivica
CroatiaZagrebCurik I
CroatiaZagrebSaric A
Czech RepublicVestecRohlena Jakub
Czech RepublicHradec KraloveStankova Pavla
Czech RepublicPraha 2Rychtarova Lucie
Czech RepublicPardubiceRousar Tomas
Czech RepublicPraha 2Danhelovska Tereza
Czech RepublicHradec KraloveKucera Otto
Czech RepublicHradec KraloveEndlicher Rene
Czech RepublicVestecEzrova Zuzana
Czech RepublicPragueDrahota Zdenek
Czech RepublicPlzen -Severni predmestiJedlicka Jan
Czech RepublicPardubiceMajtnerova Pavlina
Czech RepublicHradec KraloveCervinkova Zuzana
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Czech RepublicCeske BudejoviceZikova Alena
Czech RepublicPragueHoustek Josef
Czech RepublicPardubiceHandl Jiri
Czech RepublicPragueKrizova J
Czech RepublicVestecDavidova Eliska
Czech repHradec KraloveFalaye T
DenmarkCopenhagenKraunsoee R
DenmarkCopenhagenDela Flemming
DenmarkCopenhagenLarsen Steen
DenmarkCopenhagenSoendergaard SD
DenmarkRoskildeDalgaard Louise T
DenmarkAarhus NJespersen Nichlas Riise
DenmarkCopenhagenNielsen B
DenmarkHvidovreNehlin Jan O
DenmarkCopenhagen NScheibye-Knudsen Morten
DenmarkCopenhagen NMaise Chroeis K
DenmarkCopenhagen NMortensen OH
DenmarkAarhus NBoetker Hans Erik
DenmarkCopenhagenGonzalez-Franquesa Alba
EgyptCairoAbdel-Rahman Engy Ali
EgyptCairoAli Sameh S
EstoniaTallinnKaambre Tuuli
EstoniaTallinnTepp Kersti
EstoniaTallinnVendelin Marko
EstoniaTallinnShevchuk Igor
EstoniaTallinnKlepinin Aleksandr
EstoniaTartuPaju Kalju
EstoniaTallinnPuurand Marju
EstoniaTallinnLaasmaa Martin
EstoniaTallinnKlepinina Lyudmila
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EstoniaTallinnKarro N
FinlandHelsinkiJackson Christopher Benjamin
FinlandHelsinkiSuomalainen Wartiovaara Anu
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GermanyNeuherbergEiner C
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GermanyMagdeburgSchoenfeld Peter
GermanyDüsseldorfGoy C
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GermanyFrankfurtOsiewacz Heinz D
GermanyDuesseldorfRoden Michael
GermanyDoermann Niklas
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GermanyMunichZischka Hans
GermanyWilhelmshavenSalmon Pablo
GermanyDuesseldorfJelenik T
GermanyBiberach an der RißNold V
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IndiaVaranasiSonkar Vijay K
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IsraelBeer ShevaMishmar Dan
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ItalyPadovaViscomi Carlo
ItalySt. LorenzenHarrison David K
ItalyAnconaBattino Maurizio
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ItalyBolognaGenova Maria Luisa
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ItalyMonserratoIsola Raffaella
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ItalyBolognaPaterlini S
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JapanItabashi-ku TokyoTanaka Masashi
JapanSapporoMatsumoto J
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MalaysiaKuala LumpurHassan Hazirah
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MexicoTlalpanRodriguez-Enriquez Sara
MexicoMexico CityAparicio Trejo OE
MéxicoSan Pedro Garza García, Nuevo LeonGarcia-Rivas Gerardo
NetherlandsMaastrichtGrevendonk L
NetherlandsGA WageningenGrefte Sander
New ZealandAucklandHickey Anthony J
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New ZealandWellingtonBerridge Michael V
New ZealandAucklandWard Marie Louise
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PolandWarsawKampa Rafal Pawel
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PolandWarsawSzewczyk Adam
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PolandWarsawWasilewski M
PolandLodzWatala Cezary
PortugalAveiroVitorino Rui Miguel Pinheiro
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TaiwanChanghua CityWei Yau-Huei
The NetherlandsBT AmsterdamWuest Rob CI
The NetherlandsMaastrichtSchrauwen Patrick
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The NetherlandsDelftMcMillan Duncan GG
The NetherlandsGroningenBakker Barbara M
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UKCanterbury, KentGourlay Campbell W
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USANeedhamBrown David A
USADavisHellgren Kim T
USAPhiladelphiaGanetzky Rebecca
USAWarminsterOrynbayeva Zulfiya
USAStillwaterDavis Michael S
USACorvallisNewsom Sean A
USACorvallisBatterson Philip M
USAAuroraFord Ellen
USANew YorkGalkin Alexander
USAIndianapolisBrozinick Joseph T
USALa JollaSchilling Jan M
USAFayettevilleIyer Shilpa
USANorfolkLai Nicola
USAClevelandHoppel Charles L
USALos AngelesKwast Kurt E
USAPhiladelphiaFalk Marni J
USABethesdaFessel Joshua Patrick
USASt. LouisAbumrad Nada A
USAColorado SpringsJacobs RA
USABerkeleyWilliams Caroline M
USAWinston-SalemAhn Bumsoo
USAIowa CityWagner Brett A
USALittle RockParajuli Nirmala
USAWakefieldVarricchio Frederick
USALa JollaValentine Joseph Marco
USAJupiterTrivigno Catherine
USAFairbanksCoker Robert H
USAWinston-SalemTomar Dhanendra
USASan DiegoPatel Hemal H
USAClevelandTandler Bernard
USASan DiegoCannon Daniel T
USAEast LansingBazil Jason N
USAMilwaukeeKandel Sunil Mani
USALouisvilleSkolik Robert A
USAKansas CityThyfault John P
USAColumbusSims Carrie A
USASan Diego; La JollaMolina Anthony JA
USAFort CollinsChicco Adam J
USALittle RockMacMillan-Crow Lee Ann
USAEl PasoBajpeyi Sudip
USAPittsburghJurczak Michael J
USASeattleMarcinek David J
USABirminghamMoellering Douglas R
USAKansas CitySwerdlow Russell H
USAPhiladelphiaJang David H
USAGainesvilleNeyroud D
USAOmahaKim Julian KS
USABostonKristal Bruce S
USACorvallisRobinson Matthew M
USALouisvilleMenze Michael A
USADentonDzialowski Edward M
USAFort CollinsLi Puma Lance C
USAOrlandoCoen Paul M
USAPittsburghProchownik Edward V
USABaton RougeHand Steven C
USABaltimoreGonzalez-Freire Marta
USASt. LouisPietka Terri A
USAAnn ArborTyrrell Daniel J
USAOrlandoPino Maria F
USADenverVan Hove Johan
USAFairbanksO'Brien Kristin
USAMilwaukeeDash Ranjan K
USAStanfordStary Creed
USAEast LansingZhang Yizhu
USANashvilleWasserman David H
USADurhamLi Pingan Andy
USAMiamiFontanesi F
USAGainesvilleLeeuwenburgh Christiaan
USATorranceRossiter Harry B
USAAtlantaJang Young Charles
USAChicagoDayanidhi Sudarshan
USAOrlandoSparks Lauren M
USAPortlandGarlid Keith D
USAGreenvilleNeufer P Darrell
USAAuroraSparagna Genevieve C
USABethesdaSharma Pushpa
USAPhiladelphiaTowheed Atif
USABaton RougeIrving Brian A
USAGalvestonDurham William J
USARochesterLanza Ian R
USAWinston-SalemGonzalez-Armenta Jenny L
USALittle RockBorsheim Elisabet
... further results


Comments and discussion

  1. We are mostly interested in two WG: (1) Since we are working mostly with heart and muscles, we are interested in WG 2 - MITOEAGLE data repository in muscle and other tissues. (2) WG 1 - Standard operating procedures and user requirement document: Protocols, terminology, documentation. Since we have an expertise in fatty acid metabolism, we are specially interested in experimental protocols for the evaluation of mitochondrial capacities regarding fatty acid metabolism. Of course our parts of the WG are also in our interest. - Marina Makrecka-Kuka, Edgars Liepinsh (2016).
  2. My role in Mito-EAGLE would be mainly in WG 2 and 4, with a focus on skeletal and cardiac muscle and cultured cardiomyocytes and endothelial cells. I would particularly like to bridge the gap between the group leaders and young investigators, trying to represent the young people who are the active users of the OROBOROS equipment. This will fit in nicely with the goals in WG1. ... Major congratulations on obtaining this beautiful collaborative grant! Very glad to see this network getting the recognition it deserves! Looking forward to being part of this! - Rob C Wuest (2016).
  3. Please, find enclosed my declaration to participate with my team in the following workgroups: WG1, WG2, WG3, WG4. We are now involved and have been in not a distant past – in studying of the following cell /tissue types:
    1. Blood cells, with particular emphasis on platelets and lymphocytes – isolated from animals and humans.
    2. Endothelial cells, fibroblasts, neurocytes (neuroblastoma), astrocytes, cancer cell lines – predominantly cultured.
    3. Hepatocytes, cardiomyocytes, cell isolated from brain – isolated from lab animals. - Cezary Watala (2016).
  4. I have already contacted the portuguese CNC to nominate me for the MC of theaction. Concerning my active participation, taking into account the type of work we do in my lab I could be included in all WGs. As you know we work with mitochondria from liver, muscle and fat, as well as cultured cells from different origins (WG2-4). The elaboration of SOPs (WG1) we can certainly contribute (see the book I edited on Mitochondrial Bioenergetics and in which you contribute a chapter). I believe that everybody can be part of the WG5, but as the coordinators of the action, you and Sandra should decide what is best for the success of the action. - Carlos Palmeira (2016).
  5. I would propose my participation in the WG1: Standard operating procedures and user requirement document: Protocols, terminology, documentation, considering that the goal of WG1 is to establish an integrated and analytic environment linking mitochondrial respiration with external data (cell physiology, anthropometry, spiroergometry, lifestyle, genomics) in the context of physical fitness evaluation and clinical diagnostics. I could give my active contribution in the phase of making platform that will aggregate the Action’s complete knowledge and provides the ability to make diagnostic profiling associated with diseases in particular tasks:
    1. Develop reccomendations for quality control, data reporting and data sharing beyond the published record. Develop concepts on Open Access and institutionalised service for data management, data mining and health-care conforming standards of data interpretation
    2. Provide a summary on strategic dissemination and an education programme for MITOEAGLE.
    3. Considering that we are in process of buying the oxygraph, thus broading capacities of my lab, I would be happy to open the door of my new lab for the innovative inter-laboratory ring test experiments and together with my team contribute in that phase of the MITOEAGLE Action. I look forward to the establishment of MitoGlobal EAGLE network where, as stated in the MoU, researchers will collaborate on mapping mitochondrial physiology and medicine. The creation of such a unique well-coordinated network of senior researchers and young investigators will definitely put an added value to existing data and publications, will increase quality and validity of the research, will bring new possibilities of data sharing and data mining and will hopefully bring us to the era of more economical research by saving resources through standardised and harmnonised protocols, where the measuremnts will not be wasted due to lack of comparability. - Nebojsa Lalic (2016).
  6. Our research interest is oriented to reproductive endocrinology; especially to mechanisms that govern steroidogenesis of testicular Leydig cells in disturbed homeostasis. We use several in vivo models:
    1. stress -/+ systemic or intratesticular blockade of different stress receptors (alpha1ADR; betaADR; GR)
    2. hypogonadal-hypogonadism -/+ testosterone-replacement therapy
    3. androgens anabolics treatment -/+ blockade od AR
    4. aged rats -/+ Viagra-treatment
    5. biological clock - Silvana Andric (2016).
  7. I took a look to the MoU and the different working groups. You know well my research focus and having this into account I am interested in actions related to Working group 1 (Respirometric reference protocols, Interlaboratory proficiency test, Instrumental platforms). Working group 2 and 3: I have generated multiple mitochondrial respiration data sets in different mouse tissues (mainly in skeletal muscle, hypothalamus, liver and white adipose tissue). Currently we are also performing these assays in white adipose tissue from human patients. Hence I am interested in all milestones of WG 2 and 3. WG 5 is related to WG 1 and as you know I have interest in training, dissemination and also together with my collaborators (if needed) we could help with data sets and a data interpretation. Overall, I have a general interest on this Action and my active role in MITOEAGLE could be discussed. I could be of help participating in some of the tasks where my expertise and interest fit best. We will be forming and interdisciplinary research group with four group leaders: JC Perales, R Guimera, M Sales-Pardo and PM Garcia-Roves with two different affiliations, University of Barcelona (JCP and PMG-R - Energy metabolism) and University Rovira I Virgili (RG and MS – Data base, statistics, data mining). - Pablo M Garcia-Roves (2016).
  8. I will be pleased to contribute to the tasks of WG1 by developing interlaboratory proficiency tests and instrumental platform comparison. Moreover, as a (potential) MC member of MitoEAGLE I can also offer visibility to the Action itself (i.e. WG5: MITOEAGLE dissemination and training, according to mitoglobal.org webpages) by establishing new interactions with the International Coenzyme Q10 Association (ICQA) where I act as a member of the Executive Committee. ICQA organizes biennal conferences on new highlights of Coenzyme Q research. In 2015, we held the conference in Bologna (http://conference2015.wix.com/icqaconference) and we included in the program also some scientific sessions dedicated to mitochondrial bioenergetics and diseases. I will be pleased to enforce cooperation between ICQA and MitoEAGLE. - Maria Luisa Genova (2016).
  9. We found the scientific content and objectives of the call very interesting and compatible with our wide expertise on oxysterol analysis in food and biological systems. Our group has a large experience on lipid composition and their degradation products (volatile and non-volatile), as well as on sensory analysis. Moreover, we are currently involved in the H2020-GERI-2014-1 project "PLOTINA" ("Promoting gender balance and inclusion in research, innovation and training") with Prof. Gallina Toschi (in cc) as coordinator; the project actually includes gendered case studies where gender and sex variables are considered. You can find further information about our expertises, publications and the PLOTINA project at the following webpages: https://www.unibo.it/sitoweb/maria.rodriguez/, https://www.unibo.it/sitoweb/tullia.gallinatoschi/, http://www.unibo.it/en/research/projects-and-initiatives/research-projects-horizon-2020-1/plotina - Maria Teresa Rodriguez Estrada (2016).
  10. As you know, our current/developing interests are with "evolution" (species comparisons) and "environment" (hypoxia and cold exposure), but have also experience and interest in assessing effects of "lifestyle" (diet, exercise) and "aging" as well (in rodents). - Adam J Chicco (2016).
  11. Congratulations on the considerable progress with MITOEAGLE! I am keen to participate in this exciting project and I’m sure I can make a valuable contribution to it's success. I have extensive experience performing respirometry assays in human muscle biopsies, myoblasts/tubes and mouse tissues in the contexts of aging, obesity, exercise and inactivity. I feel that I could contribute to any of the five working groups, but particularly to WG2, WG4, and WG5. I am also happy and willing to serve on the Management Committee if needed. Again, congratulations on organizing such an exciting project. - Paul M Coen (2016).
  12. I would be interested to be involved with WG1 and WG2. In particular, I am interested in contributing to developing protocols for multicenter quality control among labs, and for permeabilized muscle bundle respirometry. - Harry B Rossiter (2016).
  13. I think that we could contribute via participation in the evaluation of the protocols, and helping to develop them further. In addition, we have been working on the establishing a database that would allow us to keep protocol details, cell isolation and several other aspects. There is nothing very advanced, but we could contribute to establishing such data collection practice. In addition, we, as opposed to many others, happen to use Strathkelvin respirometer. This alternative hardware would allow us to verify whether the protocols work on them as well. - Marko Vendelin (2016).


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