SUIT-006 O2 mt D047: Difference between revisions
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== Strengths and limitations == | == Strengths and limitations == |
Revision as of 17:23, 8 February 2019
Description
Abbreviation: N(PM)
Reference: A
SUIT number: D047_1PM;2D;2c;3Omy;4U;5Ama
O2k-Application: O2
- SUIT-category: N(PM)
- SUIT protocol pattern: Bidirectional linear coupling control protocol 1PM;2D;2c;3Omy;4U;5Ama
References
Steps and respiratory states
Step | State | Pathway | Q-junction | Comment - Events (E) and Marks (M)
|
---|---|---|---|---|
1PM | PML(n) | N | CI | 1PM
|
2D | PMP | N | CI | 1PM;2D
|
2c | PMcP | N | CI | 1PM;2D;2c
|
3Omy | PML(Omy) | N | CI | 1PM;2D;2c;3Omy
|
4U | PME | N | CI | 1PM;2D;2c;3Omy;4U
|
5Ama | ROX | 1PM;2D;2c;3Omy;4U;5Ama
|
- Bioblast links: SUIT protocols - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>
- Coupling control
- Pathway control
- ยป Electron transfer pathway
- ยป Fatty acid oxidation pathway control state, F
- ยป NADH electron transfer-pathway state, N
- ยป Succinate pathway control state, S
- ยป NS-pathway control state, NS
- ยป Glycerophosphate pathway control state, Gp
- ยป Complex IV single step, CIV
- ยป Anaplerotic pathway control state
- Pathway control
- Main fuel substrates
- ยป Glutamate, G
- ยป Glycerophosphate, Gp
- ยป Malate, M
- ยป Octanoylcarnitine, Oct
- ยป Pyruvate, P
- ยป Succinate, S
- Main fuel substrates
- Glossary
Strengths and limitations
- This protocol is indicated when the aim is to analyse coupling control in isolated mitochondria or tissue homogenates at N(PM) electron transfer-pathway state.
- + Short duration of the experiment.
- + CIV activity can be measured as an extension.
- - This protocol analyses coupling control at N-pathway, however, it is less specific than a similar protocol containing the complex II inhibitor malonic acid, that would allow to analyse the N-pathway without any contribution of the S-pathway.
- - This protocol does not include internal ET-pathway control steps.
- - Careful washing is required after the experiment to avoid carry-over of uncoupler and inhibitors, if used.
Compare SUIT protocols
- SUIT-001 O2 mt D001: Extended protocol with SUIT-006 without oligomycin as the initial coupling control module, for mitochondrial preparations.
- SUIT-003: Coupling control protocol for non-permeabilized cells (ce), counterpart to SUIT-006 for mt-preparations (mtprep).
MitoPedia concepts: SUIT protocol, SUIT A, Find
MitoPedia methods:
Respirometry