Template:SUIT-037: Difference between revisions
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[[Image:SUIT-MitoFit.png|right|190px|link=http://www.bioblast.at/index.php/MitoPedia:_SUIT |MitoPedia: SUIT]] | [[Image:SUIT-MitoFit.png|right|190px|link=http://www.bioblast.at/index.php/MitoPedia:_SUIT |MitoPedia: SUIT]] | ||
== Steps and respiratory states == | == Steps and respiratory states == | ||
[[File:1D;2M.1; | [[File:1D;2M.1;3Oct;3c;4M.2;4M.5;4M1;4M2;5P;6G;7S10;7S50;8Gp;9U;10Rot;11Ama.png|400px]] | ||
{| class="wikitable" border="1" | {| class="wikitable" border="1" | ||
Line 12: | Line 12: | ||
| ย | | ย | ||
| 1D | | 1D | ||
ย | |||
*{{Template:SUIT | * {{Template:SUIT ADP endogenous substrates}} | ||
|- | |- | ||
Line 22: | Line 22: | ||
| 1D;2M.1 | | 1D;2M.1 | ||
*{{Template:SUIT M_low}} | *{{Template:SUIT M_low}} | ||
|- | |- | ||
| | | 3Oct | ||
| ย | | [[OctM]]<sub>''P''</sub> | ||
| ย | | [[F]] | ||
| ย | | FAO | ||
| 1D;2M.1; | | 1D;2M.1;3Oct | ||
*{{Template:SUIT F}} ย | *{{Template:SUIT F}} ย | ||
*{{Template:SUIT OXPHOS}} | |||
|- | |- | ||
| 3c | | 3c | ||
| ย | | [[OctM]]c<sub>''P''</sub> | ||
| ย | | [[F]] | ||
| ย | | FAO | ||
| 1D;2M.1; | | 1D;2M.1;3Oct;3c | ||
*{{Template:SUIT F}} | |||
*{{Template:SUIT OXPHOS}} ย | *{{Template:SUIT OXPHOS}} ย | ||
*{{Template:SUIT c}} | *{{Template:SUIT c}} | ||
|- | |- | ||
| | | 4M.2 | ||
| ย | | [[OctM]]<sub>''P''</sub> | ||
| ย | | [[Fatty acid oxidation pathway control state|F(N)]] | ||
| ย | | FAO | ||
| 1D;2M.1; | | 1D;2M.1;3Oct;3c;4M.2 | ||
*{{Template:SUIT F(N)}} | |||
*Malate kinetics in the presence of saturating [ADP] allows the evaluation of malate anaplerotic pathways. | *Malate kinetics in the presence of saturating [ADP] allows the evaluation of malate anaplerotic pathways. | ||
*{{Template:SUIT M_high}} ย | *{{Template:SUIT M_high}} ย | ||
Line 55: | Line 57: | ||
|- | |- | ||
| | | 4M.5 | ||
| ย | | [[OctM]]<sub>''P''</sub> | ||
| ย | | [[Fatty acid oxidation pathway control state|F(N)]] | ||
| ย | | FAO | ||
| 1D;2M.1; | | 1D;2M.1;3Oct;3c;4M.2;4M.5 | ||
*{{Template:SUIT F(N)}} | |||
*Malate kinetics in the presence of saturating [ADP] allows the evaluation of malate anaplerotic pathways. | *Malate kinetics in the presence of saturating [ADP] allows the evaluation of malate anaplerotic pathways. | ||
*{{Template:SUIT M_high}} ย | *{{Template:SUIT M_high}} ย | ||
Line 66: | Line 69: | ||
|- | |- | ||
| | | 4M1 | ||
| ย | | [[OctM]]<sub>''P''</sub> | ||
| ย | | [[Fatty acid oxidation pathway control state|F(N)]] | ||
| ย | | FAO | ||
| 1D;2M.1; | | 1D;2M.1;3Oct;3c;4M.2;4M.5;4M1 | ||
*{{Template:SUIT F(N)}} | |||
*Malate kinetics in the presence of saturating [ADP] allows the evaluation of malate anaplerotic pathways. | *Malate kinetics in the presence of saturating [ADP] allows the evaluation of malate anaplerotic pathways. | ||
*{{Template:SUIT M_high}} ย | *{{Template:SUIT M_high}} ย | ||
Line 77: | Line 81: | ||
|- | |- | ||
| | | 4M2 | ||
| ย | | [[OctM]]<sub>''P''</sub> | ||
| ย | | [[Fatty acid oxidation pathway control state|F(N)]] | ||
| ย | | FAO | ||
| 1D;2M.1; | | 1D;2M.1;3Oct;3c;4M.2;4M.5;4M1;4M2 | ||
*{{Template:SUIT F(N)}} | |||
*Malate kinetics in the presence of saturating [ADP] allows the evaluation of malate anaplerotic pathways. | *Malate kinetics in the presence of saturating [ADP] allows the evaluation of malate anaplerotic pathways. | ||
*{{Template:SUIT M_high}} ย | *{{Template:SUIT M_high}} ย | ||
Line 88: | Line 93: | ||
|- | |- | ||
| | | 5P | ||
| [[ | | [[OctPM]]<sub>''P''</sub> | ||
| [[ | | [[FN]] | ||
| CI | | FAO<small>&</small>CI | ||
| 1D;2M.1; | | 1D;2M.1;3Oct;3c;4M.2;4M.5;4M1;4M2;5P | ||
*{{Template:SUIT | *{{Template:SUIT FN}} ย | ||
*{{Template:SUIT OXPHOS}} | *{{Template:SUIT OXPHOS}} | ||
|- | |- | ||
| | | 6G | ||
| [[ | | [[OctPGM]]<sub>''P''</sub> | ||
| [[ | | [[FN]] | ||
| CI | | FAO<small>&</small>CI | ||
| 1D;2M.1; | | 1D;2M.1;3Oct;3c;4M.2;4M.5;4M1;4M2;5P;6G | ||
*{{Template:SUIT | *{{Template:SUIT FN}} ย | ||
*{{Template:SUIT OXPHOS}} | *{{Template:SUIT OXPHOS}} | ||
|- | |- | ||
| | | 7S10 | ||
| [[ | | [[OctPGMS]]<sub>''P''</sub> | ||
| [[ | | [[FNS]] | ||
| CI<small>&</small>II | | FAO<small>&</small>CI<small>&</small>II | ||
| 1D;2M.1; | | 1D;2M.1;3Oct;3c;4M.2;4M.5;4M1;4M2;5P;6G;7S10 | ||
*{{Template:SUIT | *{{Template:SUIT FNS}} ย | ||
*{{Template:SUIT OXPHOS}} | *{{Template:SUIT OXPHOS}} | ||
|- | |- | ||
| | | 7S50 | ||
| [[ | | [[OctPGMS]]<sub>''P''</sub> | ||
| [[ | | [[FNS]] | ||
| CI<small>&</small>II | | FAO<small>&</small>CI<small>&</small>II | ||
| 1D;2M.1; | | 1D;2M.1;3Oct;3c;4M.2;4M.5;4M1;4M2;5P;6G;7S10;7S50 | ||
*{{Template:SUIT | *{{Template:SUIT FNS}} ย | ||
*{{Template:SUIT OXPHOS}} | *{{Template:SUIT OXPHOS}} | ||
|- | |- | ||
| | | 8Gp | ||
| [[ | | [[OctPGMSGp]]<sub>''P''</sub> | ||
| [[ | | [[FNSGp]] | ||
| CI<small>&</small>II<small>&</small>GpDH | | FAO<small>&</small>CI<small>&</small>II<small>&</small>GpDH | ||
| 1D;2M.1; | | 1D;2M.1;3Oct;3c;4M.2;4M.5;4M1;4M2;5P;6G;7S10;7S50;8Gp | ||
*{{Template:SUIT | *{{Template:SUIT FNSGp}} ย | ||
*{{Template:SUIT OXPHOS}} | *{{Template:SUIT OXPHOS}} | ||
|- | |- | ||
| | | 9U | ||
| [[ | | [[OctPGMSGp]]<sub>''E''</sub> | ||
| [[ | | [[FNSGp]] | ||
| CI<small>&</small>II<small>&</small>GpDH | | FAO<small>&</small>CI<small>&</small>II<small>&</small>GpDH | ||
| 1D;2M.1; | | 1D;2M.1;3Oct;3c;4M.2;4M.5;4M1;4M2;5P;6G;7S10;7S50;8Gp;9U | ||
*{{Template:SUIT | *{{Template:SUIT FNSGp}} ย | ||
*{{Template:SUIT U*}} | *{{Template:SUIT U*}} | ||
|- | |- | ||
| | | 10Rot | ||
| [[SGp]]<sub>''E''</sub> | | [[SGp]]<sub>''E''</sub> | ||
| [[SGp]] | | [[SGp]] | ||
| CII<small>&</small>GpDH | | CII<small>&</small>GpDH | ||
| 1D;2M.1; | | 1D;2M.1;3Oct;3c;4M.2;4M.5;4M1;4M2;5P;6G;7S10;7S50;8Gp;9U;10Rot | ||
*{{Template:SUIT SGp}} ย | *{{Template:SUIT SGp}} ย | ||
Line 158: | Line 163: | ||
|- | |- | ||
| | | 11Ama | ||
| [[ROX]] | | [[ROX]] | ||
| ย | | ย | ||
| ย | | ย | ||
| 1D;2M.1; | | 1D;2M.1;3Oct;3c;4M.2;4M.5;4M1;4M2;5P;6G;7S10;7S50;8Gp;9U;10Rot;11Ama | ||
*{{Template:SUIT Ama}} | *{{Template:SUIT Ama}} | ||
Latest revision as of 14:20, 12 April 2023
Steps and respiratory states
Step | State | Pathway | Q-junction | Comment - Events (E) and Marks (M) |
---|---|---|---|---|
1D | ROX | 1D
| ||
2M.1 | 1D;2M.1 | |||
3Oct | OctMP | F | FAO | 1D;2M.1;3Oct
|
3c | OctMcP | F | FAO | 1D;2M.1;3Oct;3c
|
4M.2 | OctMP | F(N) | FAO | 1D;2M.1;3Oct;3c;4M.2
|
4M.5 | OctMP | F(N) | FAO | 1D;2M.1;3Oct;3c;4M.2;4M.5
|
4M1 | OctMP | F(N) | FAO | 1D;2M.1;3Oct;3c;4M.2;4M.5;4M1
|
4M2 | OctMP | F(N) | FAO | 1D;2M.1;3Oct;3c;4M.2;4M.5;4M1;4M2
|
5P | OctPMP | FN | FAO&CI | 1D;2M.1;3Oct;3c;4M.2;4M.5;4M1;4M2;5P
|
6G | OctPGMP | FN | FAO&CI | 1D;2M.1;3Oct;3c;4M.2;4M.5;4M1;4M2;5P;6G
|
7S10 | OctPGMSP | FNS | FAO&CI&II | 1D;2M.1;3Oct;3c;4M.2;4M.5;4M1;4M2;5P;6G;7S10
|
7S50 | OctPGMSP | FNS | FAO&CI&II | 1D;2M.1;3Oct;3c;4M.2;4M.5;4M1;4M2;5P;6G;7S10;7S50
|
8Gp | OctPGMSGpP | FNSGp | FAO&CI&II&GpDH | 1D;2M.1;3Oct;3c;4M.2;4M.5;4M1;4M2;5P;6G;7S10;7S50;8Gp
|
9U | OctPGMSGpE | FNSGp | FAO&CI&II&GpDH | 1D;2M.1;3Oct;3c;4M.2;4M.5;4M1;4M2;5P;6G;7S10;7S50;8Gp;9U
|
10Rot | SGpE | SGp | CII&GpDH | 1D;2M.1;3Oct;3c;4M.2;4M.5;4M1;4M2;5P;6G;7S10;7S50;8Gp;9U;10Rot
|
11Ama | ROX | 1D;2M.1;3Oct;3c;4M.2;4M.5;4M1;4M2;5P;6G;7S10;7S50;8Gp;9U;10Rot;11Ama
|
- Bioblast links: SUIT protocols - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>
- Coupling control
- Pathway control
- ยป Electron transfer pathway
- ยป Fatty acid oxidation pathway control state, F
- ยป NADH electron transfer-pathway state, N
- ยป Succinate pathway control state, S
- ยป NS-pathway control state, NS
- ยป Glycerophosphate pathway control state, Gp
- ยป Complex IV single step, CIV
- ยป Anaplerotic pathway control state
- Pathway control
- Main fuel substrates
- ยป Glutamate, G
- ยป Glycerophosphate, Gp
- ยป Malate, M
- ยป Octanoylcarnitine, Oct
- ยป Pyruvate, P
- ยป Succinate, S
- Main fuel substrates
- Glossary