Difference between revisions of "WG1 MitoEAGLE protocols, terminology, documentation"
From Bioblast
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== SUIT protocols and terminology == | == SUIT protocols and terminology == | ||
****: '''TG1.1 Coupling states and coupling control ratios: consensus statements''' | ****: '''TG1.1 Coupling states and coupling control ratios: consensus statements''' | ||
::: TG leaders: [[Renner-Sattler Kathrin]] DE / [[Gnaiger Erich]] AT / [[Hoppel Charles L]] US | :::: TG leaders: [[Renner-Sattler Kathrin]] DE / [[Gnaiger Erich]] AT / [[Hoppel Charles L]] US | ||
::: TG participants: | :::: TG participants: | ||
****: '''TG1.2 SUIT protocols: nomenclature consistent with concept of database''' | ****: '''TG1.2 SUIT protocols: nomenclature consistent with concept of database''' | ||
::: TG leader: [[Doerrier Velasco Carolina A]] AT, [[Gnaiger Erich]] AT | :::: TG leader: [[Doerrier Velasco Carolina A]] AT, [[Gnaiger Erich]] AT | ||
::: TG participants: [[Attimonelli Marcella]] IT, [[Krako Nina]] RS, [[Vendelin Marko]] EE | :::: TG participants: [[Attimonelli Marcella]] IT, [[Krako Nina]] RS, [[Vendelin Marko]] EE | ||
****: '''TG1.3 Experimental details in SUIT''' | ****: '''TG1.3 Experimental details in SUIT''' | ||
::: TG leaders: [[Chicco Adam J]] US/ [[Hickey Anthony J]] NZ/ [[Doerrier Velasco Carolina A]] AT | :::: TG leaders: [[Chicco Adam J]] US/ [[Hickey Anthony J]] NZ/ [[Doerrier Velasco Carolina A]] AT | ||
::: TG participants: [[Casado Pinna Marta]] ES, [[Endlicher Rene]] CZ, [[Krako Nina]] RS, [[Kucera Otto]] CZ, [[Sobotka Ondrej]] CZ, [[Stankova Pavla]] CZ | :::: TG participants: [[Casado Pinna Marta]] ES, [[Endlicher Rene]] CZ, [[Krako Nina]] RS, [[Kucera Otto]] CZ, [[Sobotka Ondrej]] CZ, [[Stankova Pavla]] CZ | ||
::::» [[MitoPedia: Sample preparations]] | ::::» [[MitoPedia: Sample preparations]] | ||
::: '''Action''' | |||
::::» [[MITOEAGLE: Respiratory states |Pre-publication: Mitochondrial respiratory control states]] | ::::» [[MITOEAGLE: Respiratory states |Pre-publication: Mitochondrial respiratory control states]] | ||
::::» [[MitoPedia: Respiratory control ratios]] | ::::» [[MitoPedia: Respiratory control ratios]] | ||
| Line 74: | Line 74: | ||
== Instrumental platforms: comparisons == | == Instrumental platforms: comparisons == | ||
****: '''TG1.4 Instrumental platforms: comparisons''' | ****: '''TG1.4 Instrumental platforms: comparisons''' | ||
::: TG leaders: [[Molina Anthony JA]] US | :::: TG leaders: [[Molina Anthony JA]] US | ||
::: TG participants: [[Canto Carles]] CH (suggested), [[Genova Maria Luisa]] IT, [[Tronstad Karl Johan]] NO (suggested), [[Vendelin Marko]] EE, [[Zorzano Antonio]] ES (suggested) | :::: TG participants: [[Canto Carles]] CH (suggested), [[Genova Maria Luisa]] IT, [[Tronstad Karl Johan]] NO (suggested), [[Vendelin Marko]] EE, [[Zorzano Antonio]] ES (suggested) | ||
== Knowledge management system and proficiency test == | == Knowledge management system and proficiency test == | ||
****: '''TG1.5 Knowledge management system''' | ****: '''TG1.5 Knowledge management system''' | ||
::: TG leaders: [[Drinnan Michael]] UK | :::: TG leaders: [[Drinnan Michael]] UK | ||
::: TG participants: [[Vendelin Marko]] EE, [[Garcia-Roves PM |Garcia-Roves Pablo]] ES | :::: TG participants: [[Vendelin Marko]] EE, [[Garcia-Roves PM |Garcia-Roves Pablo]] ES | ||
::::* Towards and beyond a mitochondrial physiology database: filter and amplify more signals from this data, making them more meaningful and valuable for research and medicine. | ::::* Towards and beyond a mitochondrial physiology database: filter and amplify more signals from this data, making them more meaningful and valuable for research and medicine. | ||
****: '''TG1.6 Proficiency test''' | ****: '''TG1.6 Proficiency test''' | ||
::: TG leaders: [[Gnaiger Erich]] AT/ [[Doerrier Velasco Carolina A]] AT | :::: TG leaders: [[Gnaiger Erich]] AT/ [[Doerrier Velasco Carolina A]] AT | ||
::: TG participants: [[Genova Maria Luisa]] IT | :::: TG participants: [[Genova Maria Luisa]] IT | ||
::: '''Action''' | |||
::::» [[MitoFit-KMP]] | ::::» [[MitoFit-KMP]] | ||
::::» [[MitoFit Quality Control System]] | ::::» [[MitoFit Quality Control System]] | ||
| Line 98: | Line 98: | ||
== Documentation, dissemination and training == | == Documentation, dissemination and training == | ||
****: '''TG1.7 Documentation''' | ****: '''TG1.7 Documentation''' | ||
::: TG leaders: [[Arnould Thierry]] BE / [[Votion Dominique-Marie]] BE | :::: TG leaders: [[Arnould Thierry]] BE / [[Votion Dominique-Marie]] BE | ||
::: TG participants: [[Gnaiger Erich]] AT | :::: TG participants: [[Gnaiger Erich]] AT | ||
****: '''TG1.8 Translation to community in general''' | ****: '''TG1.8 Translation to community in general''' | ||
::: TG leader: [[Makrecka-Kuka Marina]] LV (Dissemination Coordinator), [[Rattan Suresh]] DK | :::: TG leader: [[Makrecka-Kuka Marina]] LV (Dissemination Coordinator), [[Rattan Suresh]] DK | ||
::: TG participants: [[Krako Nina]] RS, [[Irving Brian A]] US | :::: TG participants: [[Krako Nina]] RS, [[Irving Brian A]] US | ||
****: '''TG1.9 Dissemination Scientific community''' | ****: '''TG1.9 Dissemination Scientific community''' | ||
::: TG leaders: [[Makrecka-Kuka Marina]] LV / [[Gnaiger Erich]] AT | :::: TG leaders: [[Makrecka-Kuka Marina]] LV / [[Gnaiger Erich]] AT | ||
::: TG participants: [[Ali Sameh S]] EG, [[Cervinkova Zuzana]] CZ, [[Chicco Adam J]] US, [[Coen Paul M]] US, [[Eide Lars]] NO, [[Garcia-Roves Pablo M]] ES, [[Gasparre Giuseppe]] IT, [[Genova Maria Luisa]] IT, [[Haendeler Judith]] DE, [[Iyer Shilpa]] US, [[Krako Nina]] RS, [[Laner Verena]] AT, [[Mayan Maria D]] ES, [[Mishmar Dan]] IL, [[Nehlin Jan]] DK, [[Palmeira Carlos]] PT, [[Paterlini Serena]] IT, [[Porcelli Anna Maria]] IT, [[Rao Raj]] US, [[Schaefer Patrick]] DE, [[Tronstad Karl Johan]] NO, [[Trougakos Ioannis]] GR, [[Volani Chiara]] AT, [[Votion Dominique-Marie]] BE | :::: TG participants: [[Ali Sameh S]] EG, [[Cervinkova Zuzana]] CZ, [[Chicco Adam J]] US, [[Coen Paul M]] US, [[Eide Lars]] NO, [[Garcia-Roves Pablo M]] ES, [[Gasparre Giuseppe]] IT, [[Genova Maria Luisa]] IT, [[Haendeler Judith]] DE, [[Iyer Shilpa]] US, [[Krako Nina]] RS, [[Laner Verena]] AT, [[Mayan Maria D]] ES, [[Mishmar Dan]] IL, [[Nehlin Jan]] DK, [[Palmeira Carlos]] PT, [[Paterlini Serena]] IT, [[Porcelli Anna Maria]] IT, [[Rao Raj]] US, [[Schaefer Patrick]] DE, [[Tronstad Karl Johan]] NO, [[Trougakos Ioannis]] GR, [[Volani Chiara]] AT, [[Votion Dominique-Marie]] BE | ||
****: '''TG1.10 Training, Short Term Scientific Missions''' | ****: '''TG1.10 Training, Short Term Scientific Missions''' | ||
::: TG leader: [[Labieniec-Watala Magdalena]] PL, [[Klaus Susanne]] DE | :::: TG leader: [[Labieniec-Watala Magdalena]] PL, [[Klaus Susanne]] DE | ||
::: TG participants: [[Ali Sameh S]] EG, [[Cervinkova Zuzana]] CZ, [[Chicco Adam J]] US, [[Coen Paul M]] US, [[Eide Lars]] NO, [[Garcia-Roves Pablo M]] ES, [[Gasparre Giuseppe]] IT, [[Genova Maria Luisa]] IT, [[Haendeler Judith]] DE, [[Iyer Shilpa]] US, [[Krako Nina]] RS, [[Mayan Maria D]] ES, [[Mishmar Dan]] IL, [[Nehlin Jan]] DK, [[Palmeira Carlos]] PT, [[Paterlini Serena]] IT, [[Porcelli Anna Maria]] IT, [[Rao Raj]] US, [[Schaefer Patrick]] DE, [[Tronstad Karl Johan]] NO, [[Trougakos Ioannis]] GR, [[Volani Chiara]] AT, [[Votion Dominique-Marie]] BE | :::: TG participants: [[Ali Sameh S]] EG, [[Cervinkova Zuzana]] CZ, [[Chicco Adam J]] US, [[Coen Paul M]] US, [[Eide Lars]] NO, [[Garcia-Roves Pablo M]] ES, [[Gasparre Giuseppe]] IT, [[Genova Maria Luisa]] IT, [[Haendeler Judith]] DE, [[Iyer Shilpa]] US, [[Krako Nina]] RS, [[Mayan Maria D]] ES, [[Mishmar Dan]] IL, [[Nehlin Jan]] DK, [[Palmeira Carlos]] PT, [[Paterlini Serena]] IT, [[Porcelli Anna Maria]] IT, [[Rao Raj]] US, [[Schaefer Patrick]] DE, [[Tronstad Karl Johan]] NO, [[Trougakos Ioannis]] GR, [[Volani Chiara]] AT, [[Votion Dominique-Marie]] BE | ||
::::» [[Short-Term Scientific Missions MITOEAGLE]] | ::::» [[Short-Term Scientific Missions MITOEAGLE]] | ||
::: '''Action''' | |||
:::: '''Preprints for mitochondrial physiology''' | :::: '''Preprints for mitochondrial physiology''' | ||
:::::# The preprint server for biology: http://biorxiv.org/ | :::::# The preprint server for biology: http://biorxiv.org/ | ||
Revision as of 21:52, 30 January 2017
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News and Events |  |
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Working Groups | Short-Term Scientific Missions | Management Committee | Members |  |
COST Action CA15203 (2016-2021): MitoEAGLE
Evolution-Age-Gender-Lifestyle-Environment: mitochondrial fitness mapping
WG1 MitoEAGLE protocols, terminology, documentation
WG1 Action
- Standard operating procedures and user requirement document: Protocols, terminology, documentation
- Many analyses lack statistical power within a single study. Statistical combination of different studies is often difficult due to lack of methodological standardization and harmonization.
Participate
- WG Leader
- Kathrin Renner-Sattler, Mag. Dr. - [email protected]
- WG Co-Leader
- Marko Vendelin, Dr. - [email protected]
- WG participants: » Talk:WG1 MITOEAGLE protocols, terminology, documentation
- Task group leaders: suggestions discussed at the MitoFit Science Camp 2016 Kuehtai AT, and updated according to the MITOEAGLE MC Meeting 2016 Brussels BE.
- Task group participants: please send us an Email to join: [email protected]
Track record
- » 2017-07 MiPschool Obergurgl 2017
- » 2017-03 MITOEAGLE 2017 Barcelona ES
- » 2016-11 MITOEAGLE 2016 Verona IT
SUIT protocols and terminology
- TG1.1 Coupling states and coupling control ratios: consensus statements
- TG leaders: Renner-Sattler Kathrin DE / Gnaiger Erich AT / Hoppel Charles L US
- TG participants:
- TG1.2 SUIT protocols: nomenclature consistent with concept of database
- TG leader: Doerrier Velasco Carolina A AT, Gnaiger Erich AT
- TG participants: Attimonelli Marcella IT, Krako Nina RS, Vendelin Marko EE
- TG1.3 Experimental details in SUIT
- TG leaders: Chicco Adam J US/ Hickey Anthony J NZ/ Doerrier Velasco Carolina A AT
- TG participants: Casado Pinna Marta ES, Endlicher Rene CZ, Krako Nina RS, Kucera Otto CZ, Sobotka Ondrej CZ, Stankova Pavla CZ
- » MitoPedia: Sample preparations
- » MiPNet21.06 SUIT reference protocol
- » Lemieux H, Blier PU, Gnaiger E (2017) Remodeling pathway control of oxidative phosphorylation by temperature in the heart. bioRxiv doi10.1101/103457. - »Bioblast link«
Instrumental platforms: comparisons
- TG1.4 Instrumental platforms: comparisons
- TG leaders: Molina Anthony JA US
- TG participants: Canto Carles CH (suggested), Genova Maria Luisa IT, Tronstad Karl Johan NO (suggested), Vendelin Marko EE, Zorzano Antonio ES (suggested)
Knowledge management system and proficiency test
- TG1.5 Knowledge management system
- TG leaders: Drinnan Michael UK
- TG participants: Vendelin Marko EE, Garcia-Roves Pablo ES
- Towards and beyond a mitochondrial physiology database: filter and amplify more signals from this data, making them more meaningful and valuable for research and medicine.
- TG1.6 Proficiency test
- TG leaders: Gnaiger Erich AT/ Doerrier Velasco Carolina A AT
- TG participants: Genova Maria Luisa IT
Documentation, dissemination and training
- TG1.7 Documentation
- TG leaders: Arnould Thierry BE / Votion Dominique-Marie BE
- TG participants: Gnaiger Erich AT
- TG1.8 Translation to community in general
- TG leader: Makrecka-Kuka Marina LV (Dissemination Coordinator), Rattan Suresh DK
- TG participants: Krako Nina RS, Irving Brian A US
- TG1.9 Dissemination Scientific community
- TG leaders: Makrecka-Kuka Marina LV / Gnaiger Erich AT
- TG participants: Ali Sameh S EG, Cervinkova Zuzana CZ, Chicco Adam J US, Coen Paul M US, Eide Lars NO, Garcia-Roves Pablo M ES, Gasparre Giuseppe IT, Genova Maria Luisa IT, Haendeler Judith DE, Iyer Shilpa US, Krako Nina RS, Laner Verena AT, Mayan Maria D ES, Mishmar Dan IL, Nehlin Jan DK, Palmeira Carlos PT, Paterlini Serena IT, Porcelli Anna Maria IT, Rao Raj US, Schaefer Patrick DE, Tronstad Karl Johan NO, Trougakos Ioannis GR, Volani Chiara AT, Votion Dominique-Marie BE
- TG1.10 Training, Short Term Scientific Missions
- TG leader: Labieniec-Watala Magdalena PL, Klaus Susanne DE
- TG participants: Ali Sameh S EG, Cervinkova Zuzana CZ, Chicco Adam J US, Coen Paul M US, Eide Lars NO, Garcia-Roves Pablo M ES, Gasparre Giuseppe IT, Genova Maria Luisa IT, Haendeler Judith DE, Iyer Shilpa US, Krako Nina RS, Mayan Maria D ES, Mishmar Dan IL, Nehlin Jan DK, Palmeira Carlos PT, Paterlini Serena IT, Porcelli Anna Maria IT, Rao Raj US, Schaefer Patrick DE, Tronstad Karl Johan NO, Trougakos Ioannis GR, Volani Chiara AT, Votion Dominique-Marie BE
- » Short-Term Scientific Missions MITOEAGLE
- Action
- Preprints for mitochondrial physiology
- The preprint server for biology: http://biorxiv.org/
- Vale RD (2015) Accelerating scientific publication in biology. Proc Natl Acad Sci U S A 112:13439-46. - »Bioblast link
- Berg JM et al (2016) Preprints for the life sciences. Science 352:899-901. - »Bioblast link - Ginsparg was emphatic that a preprint, because it has a time stamp and is publicly available, plays a key role in establishing priority of discovery.
- Preprints for mitochondrial physiology
- Action
- Preprints for MITOEAGLE
- Lemieux H, Blier PU, Gnaiger E (2017) Remodeling pathway control of oxidative phosphorylation by temperature in the heart. bioRxiv doi10.1101/103457. - »Bioblast link«
- Preprints for MITOEAGLE
- Data availability
References
- General requirements for the competence of testing and calibration laboratories » ISO/IEC 17025:2005
