O2k-Publications: Topics

From Bioblast
Jump to navigation Jump to search

Header ecosystem 2020.jpg

News - Agenda         O2k-Open Support         O2k-Publications         O2k-Workshops and Events         O2k-Network         O2k-Feedback         NextGen-O2k



O2k-Publications: Topics

Mitochondria and Cell Research - the Oroboros Ecosystem
O2k-Publications: chronological
Publications in the MiPMap


» O2k-Publications alert - » Recent O2k-Publications
» O2k-briefs
» O2k-Publications - chronological: 4207


Mitochondrial physiology: MiP areas

# O2k-Publications MitoPedia: Comment O2k Total
1 mt-Medicine (356 entries) 356 498
2 Exercise physiology;nutrition;life style 692 964
3 Comparative MiP;environmental MiP 306 451
4 Pharmacology;toxicology 775 927
5 mt-Biogenesis;mt-density 243 325
6 Genetic knockout;overexpression 575 641
7 Instruments;methods 246 378


Pathological states

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Aging;senescence 246 381
2 Alzheimer's 65 89
3 Autism 6 10
4 Cancer 321 429
5 Cardiovascular 177 246
6 COPD 9 12
7 Diabetes 326 428
8 Inherited 61 91
9 Infectious 43 60
10 Myopathy 60 71
11 Neurodegenerative 155 216
12 Obesity 225 367
13 Parkinson's 57 93
14 Sepsis 69 79
15 Other 250 321


Stress conditions

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Cell death White, brown, beige fat tissue 92 152
2 Cryopreservation 38 61
3 Hypoxia 91 179
4 Ischemia-reperfusion 305 409
5 Oxidative stress;RONS 551 779
6 Permeability transition 69 90
7 Temperature: hypothermia; hyperthermia 90 110


Organisms

Mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Human 1311 1877
2 Pig 87 99
3 Horse 26 33
4 Bovines 21 69
5 Cat 2 4
6 Dog 12 30
7 Rabbit 16 21
8 Mouse 1204 1416
9 Rat 828 1064
10 Guinea pig 22 35
11 Other mammals including only mammals that are not listed as mammalian species above 49 80
Model organisms
# O2k-Publications MitoPedia: Comment O2k Total
1 Chicken Birds) 4 6
2 Zebrafish Fishes) 11 16
3 Drosophila Hexapods) 56 73
4 Caenorhabditis elegans Nematodes) 22 30
5 Artemia Crustaceans) 11 18
6 Saccharomyces cerevisiae Fungi) 59 83
7 Comparative MiP 306 451


Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Birds Chicken) 11 22
2 Reptiles turtles, lizards, snakes, crocodiles, alligators 12 17
3 Amphibians frogs, toads, salamanders 10 15
4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 106 141
5 Hexapods insects, springtails; » Drosophila 31 40
6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 19 39
7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 20
8 Molluscs gastropods, cephalopods, bivalves 22 39
9 Nematodes » Caenorhabditis elegans 5 11
10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 11 18
11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 50 61
12 Plants 30 55
13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 36 51
14 Eubacteria true bacteria, cyanobacteria, spirochetes 23 42
15 Archaea archaebacteria 0 6


Tissues and cells

Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Fat White, brown, beige fat tissue 163 227
2 Genital 87 118
3 Heart 663 859
4 Kidney 130 161
5 Liver 588 762
6 Lung;Gill 53 72
7 Nervous system 558 673
8 Skeletal muscle 1003 1245


Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Blood cells 229 284
2 Endothelial;epithelial;mesothelial cell 236 269
3 Fibroblast 191 250
4 Islet cell;pancreas;thymus 47 59
5 Leukemia 22 25
6 Lymphocyte 54 71
7 Platelets 110 128
8 Stem cells 35 47


Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 CHO 13 15
2 HEK 79 99
3 HeLa 35 52
4 Neuroblastoma 36 41
5 HUVEC 19 22
6 Macrophage-derived cell lines 25 34
7 Other cells and cell lines 281 323


Preparations

# O2k-Publications MitoPedia: Comment O2k Total
1 Living organism 48 237
2 Intact organ 22 36
3 Living cells 1046 1173
4 Permeabilized cells 630 663
5 Permeabilized tissue 1012 1098
6 Homogenate 328 366
7 Isolated mitochondria 1160 1447
8 SMP Submitochondrial particles 10 28
9 Chloroplasts 2 10
10 Enzyme 39 74
11 Oxidase and biochemical oxidation 38 48


Enzymes

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Adenine nucleotide translocase ANT 21 25
2 Complex I CI 444 532
3 Complex II;succinate dehydrogenase CII 392 464
4 Complex III CIII 297 346
5 Complex IV;cytochrome c oxidase CIV 402 473
6 Complex V;ATP synthase CV 218 258
7 mt-Inner membrane transporter 31 43
8 Marker enzyme 55 77
9 Supercomplex 44 60
10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 77 100
11 Uncoupling protein 59 64


Regulation

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 ADP ADP kinetics 146 193
2 ATP production 75 112
3 Aerobic glycolysis 44 85
4 Amino acid 9 19
5 Calcium 97 163
6 Coupling efficiency;uncoupling 80 145
7 Cyt c Cytochrome c 40 53
8 Fatty acid FA substrate kinetics 120 144
9 Flux control 52 82
10 Inhibitor Inhibitor kinetics 127 158
11 Ion;substrate transport 56 103
12 mt-Membrane potential Mitochondrial membrane potential
Questions.jpg


Click to expand or collaps
Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>

.::: Fundamental relationships

» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


103 157
13 Oxygen kinetics 100 138
14 Q-junction effect 13 55
15 Redox state 48 83
16 Substrate Fuel substrate kinetics 178 230
17 Temperature Temperature dependence 66 91
18 Threshold;excess capacity 27 30
19 Uncoupler Uncoupler kinetics 53 68


Coupling-control

# O2k-Publications MitoPedia: Coupling-control states Comment O2k Total
1 P OXPHOS OXPHOS capacity Oxidative phosphorylation capacity, saturating [ADP] 2574 2782
2 R ROUTINE ROUTINE respiration Physiological state, living cells 796 876
3 E ET ET capacity Maximal noncoupled respiration 1825 1923
4 L LEAK LEAK respiration Resting state, non-phosphorylating respiration 2281 2425


Pathway control

# O2k-Publications MitoPedia: Electron-transfer-pathway states Comment O2k Total
1 F F-pathway control state Fatty acid oxidation, level 5 537 636
2 N N-pathway control state NADH-linked, level 4 2194 2333
3 S S-pathway control state Succinate-linked, level 3 1493 1575
4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 138 160
5 DQ Duorquinol-linked, level 2 23 27
6 CIV Complex IV single step Ascorbate & TMPD, level 1 617 644
7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1377 1430
8 Other 128 144
9 ROX ROX Residual oxygen consumption includes non-mitochondrial respiration 1309 1359


MiPMap combinations - examples

Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total
1 O2k-Publications: Human skeletal muscle 1003 1245
2 O2k-Publications: Human heart 663 859
3 O2k-Publications: Skeletal muscle - human vs mouse 36 45
Browse data


O2k-Manuals and protocols and specific instrumental applications

# O2k-Publications MitoPedia: Comment O2k Total
1 Oxygraph-2k 4207 4207
2 TIP2k 41 41
3 O2k-Fluorometry 285 290
4 O2k-pH ISE-Module pH
Questions.jpg


Click to expand or collaps


4 5
5 Nitric Oxide 8 8
6 TPP+ O2k-ISE Module Tetraphenylphosphonium
Questions.jpg


Click to expand or collaps
Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>

.::: Fundamental relationships

» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


51 55
7 Ca2+ O2k-ISE Module 7 7
8 O2k-Spectrophotometer 8 8
9 O2k-Manual 20 21
8 O2k-Protocol 65 81
9 Theoretical background 12 68
10 Instruments;methods 246 378
11 O2k-Fluorometry - Fluorophores 20 20
12 PBI Shredder Homogenate preparation 20 22
# O2k-Publications MitoPedia: Comment O2k Total
1 Twin-Flow respirometry 0 21
2 Separate DatLab applications 29 35