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O2k-Publications: Topics
- Mitochondria and Cell Research - the Oroboros Ecosystem
- » Please send us references on your Oroboros O2k applications for the list of O2k-Publications, which is updated by Bioblast editors and active wiki users. → Contact: Mario Plangger
- » O2k-Publications alert - » Recent O2k-Publications
- » O2k-briefs
- » O2k-Publications - chronological: 4769
Mitochondrial physiology: MiP areas
# O2k-Publications MitoPedia: Comment O2k Total 1 mt-Medicine (364 entries) 364 518 2 Exercise physiology;nutrition;life style 767 1068 3 Comparative MiP;environmental MiP 328 480 4 Pharmacology;toxicology 853 1050 5 mt-Biogenesis;mt-density 250 333 6 Genetic knockout;overexpression 675 745 7 Instruments;methods 276 420
Pathological states
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Aging;senescence 282 428 2 Alzheimer's 71 94 3 Autism 7 11 4 Cancer 361 521 5 Cardiovascular 212 294 6 COPD 10 13 7 Diabetes 350 468 8 Inherited 64 98 9 Infectious 51 70 10 Myopathy 78 90 11 Neurodegenerative 170 236 12 Obesity 258 428 13 Parkinson's 70 107 14 Sepsis 75 86 15 Other 297 369
Stress conditions
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Cell death White, brown, beige fat tissue 94 158 2 Cryopreservation 41 67 3 Hypoxia 118 231 4 Ischemia-reperfusion 332 439 5 Oxidative stress;RONS 586 846 6 Permeability transition 71 96 7 Temperature: hypothermia; hyperthermia 92 113
Organisms
- Mammals
- Model organisms
# O2k-Publications MitoPedia: Comment O2k Total 1 Chicken (» Birds) 5 7 2 Zebrafish (» Fishes) 16 23 3 Drosophila (» Hexapods) 66 92 4 Caenorhabditis elegans (» Nematodes) 24 33 5 Artemia (» Crustaceans) 12 19 6 Saccharomyces cerevisiae (» Fungi) 61 88 7 Comparative MiP 328 480
- Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total 1 Birds (» Chicken) 16 28 2 Reptiles turtles, lizards, snakes, crocodiles, alligators 13 18 3 Amphibians frogs, toads, salamanders 10 15 4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 116 153 5 Hexapods insects, springtails; » Drosophila 34 43 6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 19 40 7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 20 8 Molluscs gastropods, cephalopods, bivalves 25 42 9 Nematodes » Caenorhabditis elegans 5 11 10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 11 21 11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 52 63 12 Plants 29 58 13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 43 60 14 Eubacteria true bacteria, cyanobacteria, spirochetes 26 52 15 Archaea archaebacteria 0 7
Tissues and cells
- Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Fat White, brown, beige fat tissue 190 265 2 Genital 92 123 3 Heart 732 945 4 Kidney 153 186 5 Liver 655 851 6 Lung;Gill 59 83 7 Nervous system 612 739 8 Skeletal muscle 1120 1388
- Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Blood cells 259 325 2 Endothelial;epithelial;mesothelial cell 262 297 3 Fibroblast 207 271 4 Islet cell;pancreas;thymus 55 67 5 Leukemia 22 25 6 Lymphocyte 59 77 7 Platelets 123 153 8 Stem cells 37 49
- Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 CHO 14 16 2 HEK 95 116 3 HeLa 38 55 4 Neuroblastoma 44 51 5 HUVEC 21 24 6 Macrophage-derived cell lines 26 37 7 Other cells and cell lines 294 340
Preparations
# O2k-Publications MitoPedia: Comment O2k Total 1 Living organism 53 250 2 Intact organ 23 38 3 Living cells 1183 1332 4 Permeabilized cells 721 759 5 Permeabilized tissue 1126 1221 6 Homogenate 382 426 7 Isolated mitochondria 1279 1587 8 SMP Submitochondrial particles 10 28 9 Chloroplasts 2 10 10 Enzyme 39 102 11 Oxidase and biochemical oxidation 39 49
Enzymes
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Adenine nucleotide translocase ANT 21 27 2 Complex I CI 461 608 3 Complex II;succinate dehydrogenase CII 413 640 4 Complex III CIII 302 364 5 Complex IV;cytochrome c oxidase CIV 408 500 6 Complex V;ATP synthase CV 220 268 7 mt-Inner membrane transporter 31 44 8 Marker enzyme 60 86 9 Supercomplex 49 78 10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 83 110 11 Uncoupling protein 60 66
Regulation
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 ADP ADP kinetics 153 211 2 ATP production 78 123 3 Aerobic glycolysis 50 98 4 Amino acid 9 21 5 Calcium 106 179 6 Coupling efficiency;uncoupling 84 166 7 Cyt c Cytochrome c 43 57 8 Fatty acid FA substrate kinetics 128 161 9 Flux control 54 86 10 Inhibitor Inhibitor kinetics 132 170 11 Ion;substrate transport 65 116 12 mt-Membrane potential Mitochondrial membrane potential
- Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>
- Fundamental relationships
- mt-Membrane potential and protonmotive force
- O2k-Potentiometry
- » O2k-Catalogue: O2k-TPP+ ISE-Module
- » O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
- » TPP - O2k-Procedures: Tetraphenylphosphonium
- » Specifications: MiPNet15.08 TPP electrode
- » Poster
- » Unspecific binding of TPP+
- » TPP+ inhibitory effect
- O2k-Potentiometry
- O2k-Fluorometry
- » O2k-Catalogue: O2k-FluoRespirometer
- » O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
- » Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
- » TMRM - O2k-Procedures: TMRM
- O2k-Fluorometry
- O2k-Publications
118 182 13 Oxygen kinetics 109 150 14 Q-junction effect 13 56 15 Redox state 59 99 16 Substrate Fuel substrate kinetics 181 237 17 Temperature Temperature dependence 74 101 18 Threshold;excess capacity 27 30 19 Uncoupler Uncoupler kinetics 57 72
Coupling-control
# O2k-Publications MitoPedia: Coupling-control states Comment O2k Total 1 P 
OXPHOS capacity
Oxidative phosphorylation capacity, saturating [ADP] 2901 3130 2 R 
ROUTINE respiration
Physiological state, living cells 911 998 3 E 
ET capacity
Maximal noncoupled respiration 2097 2208 4 L 
LEAK respiration
Resting state, non-phosphorylating respiration 2655 2814
Pathway control
# O2k-Publications MitoPedia: Electron-transfer-pathway states Comment O2k Total 1 F F-pathway control state Fatty acid oxidation, level 5 619 763 2 N N-pathway control state NADH-linked, level 4 2508 2657 3 S S-pathway control state Succinate-linked, level 3 1711 1819 4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 159 185 5 DQ Duorquinol-linked, level 2 27 32 6 CIV Complex IV single step Ascorbate & TMPD, level 1 711 739 7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1604 1662 8 Other 134 150 9 ROX 
Residual oxygen consumption
includes non-mitochondrial respiration 1545 1597
Additional labels
# O2k-Publications MitoPedia: Comment O2k Total 1 AmR Amplex UltraRed Extrinsic fluorophore for measurement of hydrogen peroxide production 232 237 2 MgG Magnesium Green Extrinsic fluorophore for measurement of ATP production 18 19 3 CaG Calcium Green Extrinsic fluorophore for measurement of Ca2+ production 8 9 4 PBMCs Peripheral blood mononuclear cell (PBMC) 52 57 5 Photosynthesis Photosynthesis 5 55 6 Tissue normoxia Normoxia 17 27
MiPMap combinations - examples
- Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total 1 O2k-Publications: Human skeletal muscle 1120 1388 2 O2k-Publications: Human heart 732 945 3 O2k-Publications: Skeletal muscle - human vs mouse 41 50
- Browse data
O2k-Manuals and protocols and specific instrumental applications
# O2k-Publications MitoPedia: Comment O2k Total 1 Twin-Flow respirometry 0 21 2 Separate DatLab applications 29 35
