O2k-Publications: Topics

From Bioblast
Jump to: navigation, search

Header ecosystem 2020.jpg

News - Agenda         O2k-Open Support         O2k-Publications         O2k-Workshops and Events         O2k-Network         O2k-Feedback         NextGen-O2k



O2k-Publications: Topics

Mitochondria and Cell Research - the Oroboros Ecosystem
O2k-Publications: chronological
Publications in the MiPMap


» O2k-Publications alert - » Recent O2k-Publications
» O2k-briefs
» O2k-Publications - chronological: 3770


Mitochondrial physiology: MiP areas

# O2k-Publications MitoPedia: Comment O2k Total
1 mt-Medicine (354 entries) 354 483
2 Exercise physiology;nutrition;life style 632 878
3 Comparative MiP;environmental MiP 291 428
4 Pharmacology;toxicology 670 804
5 mt-Biogenesis;mt-density 232 306
6 Genetic knockout;overexpression 504 562
7 Instruments;methods 210 314


Pathological states

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Aging;senescence 227 353
2 Alzheimer's 60 81
3 Autism 3 7
4 Cancer 296 394
5 Cardiovascular 150 216
6 COPD 8 11
7 Diabetes 293 393
8 Inherited 60 81
9 Infectious 35 47
10 Myopathy 55 66
11 Neurodegenerative 145 200
12 Obesity 197 337
13 Parkinson's 52 83
14 Sepsis 61 71
15 Other 221 289


Stress conditions

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Cell death White, brown, beige fat tissue 86 143
2 Cryopreservation 34 57
3 Hypoxia 71 103
4 Ischemia-reperfusion 291 393
5 Oxidative stress;RONS 524 730
6 Permeability transition 65 86
7 Temperature: hypothermia; hyperthermia 85 102


Organisms

Mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Human 1188 1691
2 Pig 78 90
3 Horse 23 29
4 Bovines 21 63
5 Cat 2 3
6 Dog 11 28
7 Rabbit 16 21
8 Mouse 1065 1263
9 Rat 761 983
10 Guinea pig 21 34
11 Other mammals including only mammals that are not listed as mammalian species above 46 74
Model organisms
# O2k-Publications MitoPedia: Comment O2k Total
1 Chicken Birds) 4 5
2 Zebrafish Fishes) 11 16
3 Drosophila Hexapods) 50 65
4 Caenorhabditis elegans Nematodes) 18 26
5 Artemia Crustaceans) 11 18
6 Saccharomyces cerevisiae Fungi) 52 72
7 Comparative MiP 291 428


Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Birds Chicken) 11 21
2 Reptiles turtles, lizards, snakes, crocodiles, alligators 10 14
3 Amphibians frogs, toads, salamanders 9 13
4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 98 128
5 Hexapods insects, springtails; » Drosophila 31 40
6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 19 37
7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 16
8 Molluscs gastropods, cephalopods, bivalves 18 28
9 Nematodes » Caenorhabditis elegans 3 8
10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 11 15
11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 48 59
12 Plants 25 45
13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 30 42
14 Eubacteria true bacteria, cyanobacteria, spirochetes 23 39
15 Archaea archaebacteria 0 6


Tissues and cells

Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Fat White, brown, beige fat tissue 152 213
2 Genital 80 109
3 Heart 606 787
4 Kidney 117 145
5 Liver 542 700
6 Lung;Gill 46 61
7 Nervous system 504 604
8 Skeletal muscle 913 1128


Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Blood cells 214 264
2 Endothelial;epithelial;mesothelial cell 217 247
3 Fibroblast 169 215
4 Islet cell;pancreas;thymus 44 54
5 Leukemia 22 25
6 Lymphocyte 48 62
7 Platelets 101 119
8 Stem cells 30 40


Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 CHO 13 13
2 HEK 71 89
3 HeLa 29 42
4 Neuroblastoma 32 35
5 HUVEC 19 22
6 Macrophage-derived cell lines 23 32
7 Other cells and cell lines 267 304


Preparations

# O2k-Publications MitoPedia: Comment O2k Total
1 Living organism 40 209
2 Intact organ 21 34
3 Living cells 919 1018
4 Permeabilized cells 553 584
5 Permeabilized tissue 924 1008
6 Homogenate 289 324
7 Isolated mitochondria 1068 1337
8 SMP Submitochondrial particles 9 21
9 Chloroplasts 1 9
10 Enzyme 39 68
11 Oxidase and biochemical oxidation 37 47


Enzymes

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Adenine nucleotide translocase ANT 20 24
2 Complex I CI 424 508
3 Complex II;succinate dehydrogenase CII 374 443
4 Complex III CIII 286 330
5 Complex IV;cytochrome c oxidase CIV 386 453
6 Complex V;ATP synthase CV 207 245
7 mt-Inner membrane transporter 31 43
8 Marker enzyme 50 71
9 Supercomplex 41 54
10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 75 95
11 Uncoupling protein 58 63


Regulation

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 ADP ADP kinetics 145 190
2 ATP production 71 104
3 Aerobic glycolysis 41 76
4 Amino acid 9 18
5 Calcium 86 131
6 Coupling efficiency;uncoupling 71 132
7 Cyt c Cytochrome c 38 47
8 Fatty acid FA substrate kinetics 116 140
9 Flux control 46 73
10 Inhibitor Inhibitor kinetics 128 156
11 Ion;substrate transport 52 92
12 mt-Membrane potential Mitochondrial membrane potential
Questions.jpg


Click to expand or collaps
Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>

.::: Fundamental relationships

» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


95 145
13 Oxygen kinetics 95 126
14 Q-junction effect 6 7
15 Redox state 45 70
16 Substrate Fuel substrate kinetics 174 226
17 Temperature Temperature dependence 59 82
18 Threshold;excess capacity 27 30
19 Uncoupler Uncoupler kinetics 52 68


Coupling-control states

# O2k-Publications MitoPedia: Coupling-control states Comment O2k Total
1 P OXPHOS OXPHOS capacity Oxidative phosphorylation capacity, saturating [ADP] 2301 2497
2 R ROUTINE ROUTINE respiration Physiological state, living cells 692 751
3 E ET ET capacity Maximal noncoupled respiration 1585 1669
4 L LEAK LEAK respiration Resting state, non-phosphorylating respiration 1973 2101


Pathway control states

# O2k-Publications MitoPedia: Electron-transfer-pathway states Comment O2k Total
1 F F-pathway control state Fatty acid oxidation, level 5 475 569
2 N N-pathway control state NADH-linked, level 4 1937 2057
3 S S-pathway control state Succinate-linked, level 3 1297 1368
4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 121 139
5 DQ Duorquinol-linked, level 2 17 21
6 CIV Complex IV single step Ascorbate & TMPD, level 1 548 574
7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1203 1249
8 Other 123 139
9 ROX ROX Residual oxygen consumption includes non-mitochondrial respiration 1103 1145


MiPMap combinations - examples

Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total
1 O2k-Publications: Human skeletal muscle 913 1128
2 O2k-Publications: Human heart 606 787
3 O2k-Publications: Skeletal muscle - human vs mouse 36 44
Browse data


O2k-Manuals and protocols and specific instrumental applications

# O2k-Publications MitoPedia: Comment O2k Total
1 Oxygraph-2k 3770 3770
2 TIP2k 41 41
3 O2k-Fluorometry 240 246
4 O2k-pH ISE-Module pH
Questions.jpg


Click to expand or collaps


4 5
5 Nitric Oxide 7 7
6 TPP+ O2k-ISE Module Tetraphenylphosphonium
Questions.jpg


Click to expand or collaps
Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>

.::: Fundamental relationships

» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


46 50
7 Ca2+ O2k-ISE Module 5 5
8 O2k-Spectrophotometer 8 8
9 O2k-Manual 19 20
8 O2k-Protocol 61 77
9 Theoretical background 12 66
10 Instruments;methods 210 314
11 O2k-Fluorometry - Fluorophores 19 19
12 PBI Shredder Homogenate preparation 20 21
# O2k-Publications MitoPedia: Comment O2k Total
1 Twin-Flow respirometry 0 21
2 Separate DatLab applications 26 32