O2k-Publications: Topics

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O2k-Publications: Topics

Mitochondria and Cell Research - the Oroboros Ecosystem
O2k-Publications: chronological
Publications in the MiPMap


» O2k-Publications alert - » Recent O2k-Publications
» O2k-briefs
» O2k-Publications - chronological: 3947


Mitochondrial physiology: MiP areas

# O2k-Publications MitoPedia: Comment O2k Total
1 mt-Medicine (355 entries) 355 485
2 Exercise physiology;nutrition;life style 647 893
3 Comparative MiP;environmental MiP 298 437
4 Pharmacology;toxicology 720 856
5 mt-Biogenesis;mt-density 235 310
6 Genetic knockout;overexpression 536 595
7 Instruments;methods 225 331


Pathological states

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Aging;senescence 239 365
2 Alzheimer's 64 85
3 Autism 5 9
4 Cancer 313 411
5 Cardiovascular 158 224
6 COPD 8 11
7 Diabetes 310 410
8 Inherited 60 81
9 Infectious 38 51
10 Myopathy 56 67
11 Neurodegenerative 148 203
12 Obesity 213 353
13 Parkinson's 52 83
14 Sepsis 62 72
15 Other 233 301


Stress conditions

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Cell death White, brown, beige fat tissue 89 146
2 Cryopreservation 35 58
3 Hypoxia 77 110
4 Ischemia-reperfusion 298 401
5 Oxidative stress;RONS 536 745
6 Permeability transition 67 88
7 Temperature: hypothermia; hyperthermia 88 105


Organisms

Mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Human 1237 1741
2 Pig 81 93
3 Horse 23 29
4 Bovines 21 63
5 Cat 2 4
6 Dog 11 28
7 Rabbit 16 21
8 Mouse 1120 1319
9 Rat 791 1019
10 Guinea pig 22 35
11 Other mammals including only mammals that are not listed as mammalian species above 46 74
Model organisms
# O2k-Publications MitoPedia: Comment O2k Total
1 Chicken Birds) 4 5
2 Zebrafish Fishes) 11 16
3 Drosophila Hexapods) 53 68
4 Caenorhabditis elegans Nematodes) 20 28
5 Artemia Crustaceans) 11 18
6 Saccharomyces cerevisiae Fungi) 55 75
7 Comparative MiP 298 437


Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Birds Chicken) 11 21
2 Reptiles turtles, lizards, snakes, crocodiles, alligators 10 15
3 Amphibians frogs, toads, salamanders 10 15
4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 102 132
5 Hexapods insects, springtails; » Drosophila 31 40
6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 19 37
7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 16
8 Molluscs gastropods, cephalopods, bivalves 20 30
9 Nematodes » Caenorhabditis elegans 4 9
10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 11 15
11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 48 59
12 Plants 27 47
13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 32 44
14 Eubacteria true bacteria, cyanobacteria, spirochetes 24 41
15 Archaea archaebacteria 0 6


Tissues and cells

Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Fat White, brown, beige fat tissue 154 215
2 Genital 82 111
3 Heart 632 816
4 Kidney 127 156
5 Liver 560 720
6 Lung;Gill 50 65
7 Nervous system 524 624
8 Skeletal muscle 944 1163


Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Blood cells 223 273
2 Endothelial;epithelial;mesothelial cell 228 258
3 Fibroblast 174 220
4 Islet cell;pancreas;thymus 45 57
5 Leukemia 22 25
6 Lymphocyte 49 63
7 Platelets 105 123
8 Stem cells 31 41


Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 CHO 13 13
2 HEK 74 92
3 HeLa 31 45
4 Neuroblastoma 34 37
5 HUVEC 19 22
6 Macrophage-derived cell lines 24 33
7 Other cells and cell lines 272 309


Preparations

# O2k-Publications MitoPedia: Comment O2k Total
1 Living organism 46 216
2 Intact organ 21 34
3 Living cells 972 1074
4 Permeabilized cells 573 605
5 Permeabilized tissue 959 1044
6 Homogenate 305 340
7 Isolated mitochondria 1112 1389
8 SMP Submitochondrial particles 9 21
9 Chloroplasts 1 9
10 Enzyme 39 69
11 Oxidase and biochemical oxidation 38 48


Enzymes

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Adenine nucleotide translocase ANT 20 24
2 Complex I CI 430 514
3 Complex II;succinate dehydrogenase CII 381 451
4 Complex III CIII 290 334
5 Complex IV;cytochrome c oxidase CIV 392 460
6 Complex V;ATP synthase CV 211 249
7 mt-Inner membrane transporter 31 43
8 Marker enzyme 50 72
9 Supercomplex 42 55
10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 76 97
11 Uncoupling protein 58 63


Regulation

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 ADP ADP kinetics 145 190
2 ATP production 72 105
3 Aerobic glycolysis 41 76
4 Amino acid 9 18
5 Calcium 89 136
6 Coupling efficiency;uncoupling 73 136
7 Cyt c Cytochrome c 38 48
8 Fatty acid FA substrate kinetics 116 140
9 Flux control 47 76
10 Inhibitor Inhibitor kinetics 127 155
11 Ion;substrate transport 55 95
12 mt-Membrane potential Mitochondrial membrane potential
Questions.jpg


Click to expand or collaps
Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>

.::: Fundamental relationships

» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


99 151
13 Oxygen kinetics 97 128
14 Q-junction effect 7 10
15 Redox state 46 72
16 Substrate Fuel substrate kinetics 175 227
17 Temperature Temperature dependence 60 84
18 Threshold;excess capacity 27 30
19 Uncoupler Uncoupler kinetics 52 68


Coupling-control

# O2k-Publications MitoPedia: Coupling-control states Comment O2k Total
1 P OXPHOS OXPHOS capacity Oxidative phosphorylation capacity, saturating [ADP] 2406 2607
2 R ROUTINE ROUTINE respiration Physiological state, living cells 736 797
3 E ET ET capacity Maximal noncoupled respiration 1681 1767
4 L LEAK LEAK respiration Resting state, non-phosphorylating respiration 2098 2231


Pathway control

# O2k-Publications MitoPedia: Electron-transfer-pathway states Comment O2k Total
1 F F-pathway control state Fatty acid oxidation, level 5 501 597
2 N N-pathway control state NADH-linked, level 4 2040 2167
3 S S-pathway control state Succinate-linked, level 3 1368 1443
4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 130 150
5 DQ Duorquinol-linked, level 2 17 21
6 CIV Complex IV single step Ascorbate & TMPD, level 1 578 605
7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1271 1319
8 Other 125 141
9 ROX ROX Residual oxygen consumption includes non-mitochondrial respiration 1182 1224


MiPMap combinations - examples

Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total
1 O2k-Publications: Human skeletal muscle 944 1163
2 O2k-Publications: Human heart 632 816
3 O2k-Publications: Skeletal muscle - human vs mouse 36 44
Browse data


O2k-Manuals and protocols and specific instrumental applications

# O2k-Publications MitoPedia: Comment O2k Total
1 Oxygraph-2k 3947 3947
2 TIP2k 41 41
3 O2k-Fluorometry 263 269
4 O2k-pH ISE-Module pH
Questions.jpg


Click to expand or collaps


4 5
5 Nitric Oxide 8 8
6 TPP+ O2k-ISE Module Tetraphenylphosphonium
Questions.jpg


Click to expand or collaps
Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>

.::: Fundamental relationships

» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


49 53
7 Ca2+ O2k-ISE Module 6 6
8 O2k-Spectrophotometer 8 8
9 O2k-Manual 19 20
8 O2k-Protocol 62 78
9 Theoretical background 12 68
10 Instruments;methods 225 331
11 O2k-Fluorometry - Fluorophores 20 20
12 PBI Shredder Homogenate preparation 20 21
# O2k-Publications MitoPedia: Comment O2k Total
1 Twin-Flow respirometry 0 21
2 Separate DatLab applications 27 33