From Bioblast
O2k-Publications: Topics
- Mitochondria and Cell Research - the Oroboros Ecosystem
- » Please send us references on your Oroboros O2k applications for the list of O2k-Publications, which is updated by Bioblast editors and active wiki users. → Contact: Mario Plangger
- » O2k-Publications alert - » Recent O2k-Publications
- » O2k-briefs
- » O2k-Publications - chronological: 4606
Mitochondrial physiology: MiP areas
# O2k-Publications MitoPedia: Comment O2k Total 1 mt-Medicine (361 entries) 361 512 2 Exercise physiology;nutrition;life style 735 1021 3 Comparative MiP;environmental MiP 319 471 4 Pharmacology;toxicology 832 1015 5 mt-Biogenesis;mt-density 246 329 6 Genetic knockout;overexpression 634 702 7 Instruments;methods 272 411
Pathological states
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Aging;senescence 269 407 2 Alzheimer's 70 93 3 Autism 7 11 4 Cancer 351 486 5 Cardiovascular 205 277 6 COPD 9 12 7 Diabetes 344 455 8 Inherited 62 97 9 Infectious 49 68 10 Myopathy 75 86 11 Neurodegenerative 167 231 12 Obesity 251 411 13 Parkinson's 67 103 14 Sepsis 74 84 15 Other 281 353
Stress conditions
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Cell death White, brown, beige fat tissue 92 155 2 Cryopreservation 41 65 3 Hypoxia 111 214 4 Ischemia-reperfusion 323 429 5 Oxidative stress;RONS 575 826 6 Permeability transition 71 96 7 Temperature: hypothermia; hyperthermia 91 112
Organisms
- Mammals
- Model organisms
# O2k-Publications MitoPedia: Comment O2k Total 1 Chicken (» Birds) 5 7 2 Zebrafish (» Fishes) 14 21 3 Drosophila (» Hexapods) 63 85 4 Caenorhabditis elegans (» Nematodes) 24 32 5 Artemia (» Crustaceans) 11 18 6 Saccharomyces cerevisiae (» Fungi) 61 87 7 Comparative MiP 319 471
- Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total 1 Birds (» Chicken) 15 27 2 Reptiles turtles, lizards, snakes, crocodiles, alligators 13 18 3 Amphibians frogs, toads, salamanders 10 15 4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 116 153 5 Hexapods insects, springtails; » Drosophila 32 41 6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 19 40 7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 20 8 Molluscs gastropods, cephalopods, bivalves 25 42 9 Nematodes » Caenorhabditis elegans 5 11 10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 11 21 11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 51 62 12 Plants 28 55 13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 40 57 14 Eubacteria true bacteria, cyanobacteria, spirochetes 25 46 15 Archaea archaebacteria 0 7
Tissues and cells
- Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Fat White, brown, beige fat tissue 184 257 2 Genital 92 123 3 Heart 715 922 4 Kidney 147 179 5 Liver 633 825 6 Lung;Gill 58 79 7 Nervous system 601 723 8 Skeletal muscle 1080 1342
- Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Blood cells 247 313 2 Endothelial;epithelial;mesothelial cell 254 289 3 Fibroblast 200 264 4 Islet cell;pancreas;thymus 54 66 5 Leukemia 22 25 6 Lymphocyte 56 74 7 Platelets 120 148 8 Stem cells 36 48
- Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 CHO 13 15 2 HEK 93 114 3 HeLa 37 54 4 Neuroblastoma 42 48 5 HUVEC 19 22 6 Macrophage-derived cell lines 26 36 7 Other cells and cell lines 292 338
Preparations
# O2k-Publications MitoPedia: Comment O2k Total 1 Living organism 52 247 2 Intact organ 23 38 3 Living cells 1132 1277 4 Permeabilized cells 699 736 5 Permeabilized tissue 1093 1185 6 Homogenate 370 410 7 Isolated mitochondria 1239 1541 8 SMP Submitochondrial particles 10 28 9 Chloroplasts 3 11 10 Enzyme 39 84 11 Oxidase and biochemical oxidation 38 48
Enzymes
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Adenine nucleotide translocase ANT 21 27 2 Complex I CI 457 585 3 Complex II;succinate dehydrogenase CII 409 630 4 Complex III CIII 299 358 5 Complex IV;cytochrome c oxidase CIV 404 481 6 Complex V;ATP synthase CV 219 264 7 mt-Inner membrane transporter 31 44 8 Marker enzyme 58 84 9 Supercomplex 48 73 10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 81 108 11 Uncoupling protein 60 66
Regulation
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 ADP ADP kinetics 152 206 2 ATP production 79 120 3 Aerobic glycolysis 49 94 4 Amino acid 9 20 5 Calcium 104 177 6 Coupling efficiency;uncoupling 82 159 7 Cyt c Cytochrome c 42 56 8 Fatty acid FA substrate kinetics 126 157 9 Flux control 54 86 10 Inhibitor Inhibitor kinetics 131 168 11 Ion;substrate transport 63 111 12 mt-Membrane potential Mitochondrial membrane potential
- Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>
- Fundamental relationships
- mt-Membrane potential and protonmotive force
- O2k-Potentiometry
- » O2k-Catalogue: O2k-TPP+ ISE-Module
- » O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
- » TPP - O2k-Procedures: Tetraphenylphosphonium
- » Specifications: MiPNet15.08 TPP electrode
- » Poster
- » Unspecific binding of TPP+
- » TPP+ inhibitory effect
- O2k-Potentiometry
- O2k-Fluorometry
- » O2k-Catalogue: O2k-FluoRespirometer
- » O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
- » Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
- » TMRM - O2k-Procedures: TMRM
- O2k-Fluorometry
- O2k-Publications
113 172 13 Oxygen kinetics 105 145 14 Q-junction effect 13 56 15 Redox state 54 94 16 Substrate Fuel substrate kinetics 181 234 17 Temperature Temperature dependence 73 99 18 Threshold;excess capacity 27 30 19 Uncoupler Uncoupler kinetics 55 70
Coupling-control
# O2k-Publications MitoPedia: Coupling-control states Comment O2k Total 1 P 
OXPHOS capacity
Oxidative phosphorylation capacity, saturating [ADP] 2800 3025 2 R 
ROUTINE respiration
Physiological state, living cells 868 953 3 E 
ET capacity
Maximal noncoupled respiration 2007 2112 4 L 
LEAK respiration
Resting state, non-phosphorylating respiration 2539 2693
Pathway control
# O2k-Publications MitoPedia: Electron-transfer-pathway states Comment O2k Total 1 F F-pathway control state Fatty acid oxidation, level 5 591 729 2 N N-pathway control state NADH-linked, level 4 2410 2555 3 S S-pathway control state Succinate-linked, level 3 1641 1744 4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 151 175 5 DQ Duorquinol-linked, level 2 25 30 6 CIV Complex IV single step Ascorbate & TMPD, level 1 686 713 7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1537 1592 8 Other 130 146 9 ROX 
Residual oxygen consumption
includes non-mitochondrial respiration 1479 1531
Additional labels
# O2k-Publications MitoPedia: Comment O2k Total 1 AmR Amplex UltraRed Extrinsic fluorophore for measurement of hydrogen peroxide production 223 228 2 MgG Magnesium Green Extrinsic fluorophore for measurement of ATP production 17 18 3 CaG Calcium Green Extrinsic fluorophore for measurement of Ca2+ production 8 9 4 PBMCs Peripheral blood mononuclear cell (PBMC) 49 54 5 Photosynthesis Photosynthesis 4 53 6 Tissue normoxia Normoxia 17 27
MiPMap combinations - examples
- Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total 1 O2k-Publications: Human skeletal muscle 1080 1342 2 O2k-Publications: Human heart 715 922 3 O2k-Publications: Skeletal muscle - human vs mouse 38 47
- Browse data
O2k-Manuals and protocols and specific instrumental applications
# O2k-Publications MitoPedia: Comment O2k Total 1 Twin-Flow respirometry 0 21 2 Separate DatLab applications 29 35
