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O2k-Publications: Topics
- Mitochondria and Cell Research - the Oroboros Ecosystem
Contents
Mitochondrial physiology: MiP areas
# O2k-Publications MitoPedia: Comment O2k Total 1 mt-Medicine (355 entries) 355 485 2 Exercise physiology;nutrition;life style 653 899 3 Comparative MiP;environmental MiP 299 438 4 Pharmacology;toxicology 723 859 5 mt-Biogenesis;mt-density 235 310 6 Genetic knockout;overexpression 539 598 7 Instruments;methods 226 336
Pathological states
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Aging;senescence 239 365 2 Alzheimer's 64 85 3 Autism 5 9 4 Cancer 315 413 5 Cardiovascular 162 228 6 COPD 8 11 7 Diabetes 312 413 8 Inherited 60 81 9 Infectious 38 51 10 Myopathy 56 67 11 Neurodegenerative 148 203 12 Obesity 216 357 13 Parkinson's 52 84 14 Sepsis 63 73 15 Other 234 302
Stress conditions
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Cell death White, brown, beige fat tissue 89 146 2 Cryopreservation 35 58 3 Hypoxia 77 110 4 Ischemia-reperfusion 299 402 5 Oxidative stress;RONS 537 746 6 Permeability transition 67 88 7 Temperature: hypothermia; hyperthermia 89 106
Organisms
- Mammals
- Model organisms
# O2k-Publications MitoPedia: Comment O2k Total 1 Chicken (» Birds) 4 5 2 Zebrafish (» Fishes) 11 16 3 Drosophila (» Hexapods) 54 70 4 Caenorhabditis elegans (» Nematodes) 20 28 5 Artemia (» Crustaceans) 11 18 6 Saccharomyces cerevisiae (» Fungi) 55 75 7 Comparative MiP 299 438
- Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total 1 Birds (» Chicken) 11 21 2 Reptiles turtles, lizards, snakes, crocodiles, alligators 10 15 3 Amphibians frogs, toads, salamanders 10 15 4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 103 133 5 Hexapods insects, springtails; » Drosophila 31 40 6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 19 37 7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 16 8 Molluscs gastropods, cephalopods, bivalves 20 30 9 Nematodes » Caenorhabditis elegans 4 9 10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 11 15 11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 48 59 12 Plants 28 51 13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 32 44 14 Eubacteria true bacteria, cyanobacteria, spirochetes 24 43 15 Archaea archaebacteria 0 6
Tissues and cells
- Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Fat White, brown, beige fat tissue 154 215 2 Genital 83 112 3 Heart 635 823 4 Kidney 127 156 5 Liver 563 725 6 Lung;Gill 50 65 7 Nervous system 526 626 8 Skeletal muscle 950 1169
- Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Blood cells 223 273 2 Endothelial;epithelial;mesothelial cell 228 258 3 Fibroblast 177 223 4 Islet cell;pancreas;thymus 45 57 5 Leukemia 22 25 6 Lymphocyte 49 63 7 Platelets 106 124 8 Stem cells 31 41
- Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 CHO 13 13 2 HEK 74 92 3 HeLa 31 45 4 Neuroblastoma 34 37 5 HUVEC 19 22 6 Macrophage-derived cell lines 24 33 7 Other cells and cell lines 274 311
Preparations
# O2k-Publications MitoPedia: Comment O2k Total 1 Living organism 46 216 2 Intact organ 21 34 3 Living cells 979 1082 4 Permeabilized cells 582 614 5 Permeabilized tissue 964 1049 6 Homogenate 307 342 7 Isolated mitochondria 1115 1394 8 SMP Submitochondrial particles 9 26 9 Chloroplasts 1 9 10 Enzyme 39 70 11 Oxidase and biochemical oxidation 38 48
Enzymes
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Adenine nucleotide translocase ANT 21 25 2 Complex I CI 431 515 3 Complex II;succinate dehydrogenase CII 382 452 4 Complex III CIII 290 335 5 Complex IV;cytochrome c oxidase CIV 393 461 6 Complex V;ATP synthase CV 211 249 7 mt-Inner membrane transporter 31 43 8 Marker enzyme 50 72 9 Supercomplex 42 58 10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 76 97 11 Uncoupling protein 59 64
Regulation
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 ADP ADP kinetics 145 191 2 ATP production 72 105 3 Aerobic glycolysis 41 76 4 Amino acid 9 18 5 Calcium 90 137 6 Coupling efficiency;uncoupling 74 137 7 Cyt c Cytochrome c 38 50 8 Fatty acid FA substrate kinetics 117 141 9 Flux control 48 79 10 Inhibitor Inhibitor kinetics 127 156 11 Ion;substrate transport 55 95 12 mt-Membrane potential Mitochondrial membrane potential
- Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>
.::: Fundamental relationships
- mt-Membrane potential and protonmotive force
- O2k-Potentiometry
- » O2k-Catalogue: O2k-TPP+ ISE-Module
- » O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
- » TPP - O2k-Procedures: Tetraphenylphosphonium
- » Specifications: MiPNet15.08 TPP electrode
- » Poster
- » Unspecific binding of TPP+
- » TPP+ inhibitory effect
- O2k-Potentiometry
- O2k-Fluorometry
- » O2k-Catalogue: O2k-FluoRespirometer
- » O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
- » Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
- » TMRM - O2k-Procedures: TMRM
- O2k-Fluorometry
- O2k-Publications
99 151 13 Oxygen kinetics 98 130 14 Q-junction effect 12 53 15 Redox state 46 74 16 Substrate Fuel substrate kinetics 176 228 17 Temperature Temperature dependence 61 85 18 Threshold;excess capacity 27 30 19 Uncoupler Uncoupler kinetics 52 68
Coupling-control
# O2k-Publications MitoPedia: Coupling-control states Comment O2k Total 1 P 
OXPHOS capacity
Oxidative phosphorylation capacity, saturating [ADP] 2424 2625 2 R 
ROUTINE respiration
Physiological state, living cells 743 806 3 E 
ET capacity
Maximal noncoupled respiration 1689 1775 4 L 
LEAK respiration
Resting state, non-phosphorylating respiration 2117 2250
Pathway control
# O2k-Publications MitoPedia: Electron-transfer-pathway states Comment O2k Total 1 F F-pathway control state Fatty acid oxidation, level 5 503 599 2 N N-pathway control state NADH-linked, level 4 2052 2184 3 S S-pathway control state Succinate-linked, level 3 1378 1457 4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 130 150 5 DQ Duorquinol-linked, level 2 17 22 6 CIV Complex IV single step Ascorbate & TMPD, level 1 580 607 7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1278 1328 8 Other 125 142 9 ROX 
Residual oxygen consumption
includes non-mitochondrial respiration 1189 1231
MiPMap combinations - examples
- Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total 1 O2k-Publications: Human skeletal muscle 950 1169 2 O2k-Publications: Human heart 635 823 3 O2k-Publications: Skeletal muscle - human vs mouse 36 44
- Browse data
O2k-Manuals and protocols and specific instrumental applications
# O2k-Publications MitoPedia: Comment O2k Total 1 Twin-Flow respirometry 0 21 2 Separate DatLab applications 27 33
