O2k-Publications: Topics

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O2k-Publications: Topics

Mitochondria and Cell Research - the Oroboros Ecosystem
O2k-Publications: chronological
Publications in the MiPMap


» O2k-Publications alert - » Recent O2k-Publications
» O2k-briefs
» O2k-Publications - chronological: 3974


Mitochondrial physiology: MiP areas

# O2k-Publications MitoPedia: Comment O2k Total
1 mt-Medicine (355 entries) 355 485
2 Exercise physiology;nutrition;life style 653 899
3 Comparative MiP;environmental MiP 299 438
4 Pharmacology;toxicology 723 859
5 mt-Biogenesis;mt-density 235 310
6 Genetic knockout;overexpression 539 598
7 Instruments;methods 226 336


Pathological states

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Aging;senescence 239 365
2 Alzheimer's 64 85
3 Autism 5 9
4 Cancer 315 413
5 Cardiovascular 162 228
6 COPD 8 11
7 Diabetes 312 413
8 Inherited 60 81
9 Infectious 38 51
10 Myopathy 56 67
11 Neurodegenerative 148 203
12 Obesity 216 357
13 Parkinson's 52 84
14 Sepsis 63 73
15 Other 234 302


Stress conditions

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Cell death White, brown, beige fat tissue 89 146
2 Cryopreservation 35 58
3 Hypoxia 77 110
4 Ischemia-reperfusion 299 402
5 Oxidative stress;RONS 537 746
6 Permeability transition 67 88
7 Temperature: hypothermia; hyperthermia 89 106


Organisms

Mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Human 1242 1747
2 Pig 82 94
3 Horse 23 29
4 Bovines 21 67
5 Cat 2 4
6 Dog 12 29
7 Rabbit 16 21
8 Mouse 1129 1330
9 Rat 794 1023
10 Guinea pig 22 35
11 Other mammals including only mammals that are not listed as mammalian species above 46 74
Model organisms
# O2k-Publications MitoPedia: Comment O2k Total
1 Chicken Birds) 4 5
2 Zebrafish Fishes) 11 16
3 Drosophila Hexapods) 54 70
4 Caenorhabditis elegans Nematodes) 20 28
5 Artemia Crustaceans) 11 18
6 Saccharomyces cerevisiae Fungi) 55 75
7 Comparative MiP 299 438


Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Birds Chicken) 11 21
2 Reptiles turtles, lizards, snakes, crocodiles, alligators 10 15
3 Amphibians frogs, toads, salamanders 10 15
4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 103 133
5 Hexapods insects, springtails; » Drosophila 31 40
6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 19 37
7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 16
8 Molluscs gastropods, cephalopods, bivalves 20 30
9 Nematodes » Caenorhabditis elegans 4 9
10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 11 15
11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 48 59
12 Plants 28 51
13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 32 44
14 Eubacteria true bacteria, cyanobacteria, spirochetes 24 43
15 Archaea archaebacteria 0 6


Tissues and cells

Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Fat White, brown, beige fat tissue 154 215
2 Genital 83 112
3 Heart 635 823
4 Kidney 127 156
5 Liver 563 725
6 Lung;Gill 50 65
7 Nervous system 526 626
8 Skeletal muscle 950 1169


Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Blood cells 223 273
2 Endothelial;epithelial;mesothelial cell 228 258
3 Fibroblast 177 223
4 Islet cell;pancreas;thymus 45 57
5 Leukemia 22 25
6 Lymphocyte 49 63
7 Platelets 106 124
8 Stem cells 31 41


Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 CHO 13 13
2 HEK 74 92
3 HeLa 31 45
4 Neuroblastoma 34 37
5 HUVEC 19 22
6 Macrophage-derived cell lines 24 33
7 Other cells and cell lines 274 311


Preparations

# O2k-Publications MitoPedia: Comment O2k Total
1 Living organism 46 216
2 Intact organ 21 34
3 Living cells 979 1082
4 Permeabilized cells 582 614
5 Permeabilized tissue 964 1049
6 Homogenate 307 342
7 Isolated mitochondria 1115 1394
8 SMP Submitochondrial particles 9 26
9 Chloroplasts 1 9
10 Enzyme 39 70
11 Oxidase and biochemical oxidation 38 48


Enzymes

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Adenine nucleotide translocase ANT 21 25
2 Complex I CI 431 515
3 Complex II;succinate dehydrogenase CII 382 452
4 Complex III CIII 290 335
5 Complex IV;cytochrome c oxidase CIV 393 461
6 Complex V;ATP synthase CV 211 249
7 mt-Inner membrane transporter 31 43
8 Marker enzyme 50 72
9 Supercomplex 42 58
10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 76 97
11 Uncoupling protein 59 64


Regulation

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 ADP ADP kinetics 145 191
2 ATP production 72 105
3 Aerobic glycolysis 41 76
4 Amino acid 9 18
5 Calcium 90 137
6 Coupling efficiency;uncoupling 74 137
7 Cyt c Cytochrome c 38 50
8 Fatty acid FA substrate kinetics 117 141
9 Flux control 48 79
10 Inhibitor Inhibitor kinetics 127 156
11 Ion;substrate transport 55 95
12 mt-Membrane potential Mitochondrial membrane potential
Questions.jpg


Click to expand or collaps
Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>

.::: Fundamental relationships

» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


99 151
13 Oxygen kinetics 98 130
14 Q-junction effect 12 53
15 Redox state 46 74
16 Substrate Fuel substrate kinetics 176 228
17 Temperature Temperature dependence 61 85
18 Threshold;excess capacity 27 30
19 Uncoupler Uncoupler kinetics 52 68


Coupling-control

# O2k-Publications MitoPedia: Coupling-control states Comment O2k Total
1 P OXPHOS OXPHOS capacity Oxidative phosphorylation capacity, saturating [ADP] 2424 2625
2 R ROUTINE ROUTINE respiration Physiological state, living cells 743 806
3 E ET ET capacity Maximal noncoupled respiration 1689 1775
4 L LEAK LEAK respiration Resting state, non-phosphorylating respiration 2117 2250


Pathway control

# O2k-Publications MitoPedia: Electron-transfer-pathway states Comment O2k Total
1 F F-pathway control state Fatty acid oxidation, level 5 503 599
2 N N-pathway control state NADH-linked, level 4 2052 2184
3 S S-pathway control state Succinate-linked, level 3 1378 1457
4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 130 150
5 DQ Duorquinol-linked, level 2 17 22
6 CIV Complex IV single step Ascorbate & TMPD, level 1 580 607
7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1278 1328
8 Other 125 142
9 ROX ROX Residual oxygen consumption includes non-mitochondrial respiration 1189 1231


MiPMap combinations - examples

Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total
1 O2k-Publications: Human skeletal muscle 950 1169
2 O2k-Publications: Human heart 635 823
3 O2k-Publications: Skeletal muscle - human vs mouse 36 44
Browse data


O2k-Manuals and protocols and specific instrumental applications

# O2k-Publications MitoPedia: Comment O2k Total
1 Oxygraph-2k 3974 3974
2 TIP2k 41 41
3 O2k-Fluorometry 263 268
4 O2k-pH ISE-Module pH
Questions.jpg


Click to expand or collaps


4 5
5 Nitric Oxide 8 8
6 TPP+ O2k-ISE Module Tetraphenylphosphonium
Questions.jpg


Click to expand or collaps
Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>

.::: Fundamental relationships

» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


49 53
7 Ca2+ O2k-ISE Module 5 5
8 O2k-Spectrophotometer 8 8
9 O2k-Manual 19 20
8 O2k-Protocol 62 78
9 Theoretical background 12 68
10 Instruments;methods 226 336
11 O2k-Fluorometry - Fluorophores 20 20
12 PBI Shredder Homogenate preparation 20 21
# O2k-Publications MitoPedia: Comment O2k Total
1 Twin-Flow respirometry 0 21
2 Separate DatLab applications 27 33